RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SDR42E1Q8WUS8 393 aa14.68□□□□□ -0.06
SHMT2-209ENST00000553949 GLIS2Q9BZE0 524 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-209ENST00000553949 PATL2C9JE40 543 aaKnown RBP14.67□□□□□ -0.06
SHMT2-209ENST00000553949 SGSM2O43147 1006 aa14.67□□□□□ -0.06
SHMT2-209ENST00000553949 TOMM70O94826 608 aa14.67□□□□□ -0.06
SHMT2-209ENST00000553949 VPS53Q5VIR6 699 aa14.67□□□□□ -0.06
SHMT2-209ENST00000553949 FAM151AQ8WW52 585 aa14.67□□□□□ -0.06
SHMT2-209ENST00000553949 ESYT1Q9BSJ8 1104 aa14.67□□□□□ -0.06
SHMT2-209ENST00000553949 OSBPL5Q9H0X9 879 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-209ENST00000553949 DCP1AQ9NPI6 582 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-209ENST00000553949 ATP8A2Q9NTI2 1148 aa14.67□□□□□ -0.06
SHMT2-209ENST00000553949 PPP2R3BQ9Y5P8 575 aa14.67□□□□□ -0.06
SHMT2-209ENST00000553949 RPAP1Q9BWH6 1393 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-209ENST00000553949 GSG1L2A8MUP6 293 aa14.66□□□□□ -0.06
SHMT2-209ENST00000553949 FOXP2O15409 715 aa14.66□□□□□ -0.06
SHMT2-209ENST00000553949 APPP05067 770 aa14.66□□□□□ -0.06
SHMT2-209ENST00000553949 DLK2Q6UY11 383 aa14.66□□□□□ -0.06
SHMT2-209ENST00000553949 SMC1BQ8NDV3 1235 aa14.66□□□□□ -0.06
SHMT2-209ENST00000553949 RBM46Q8TBY0 533 aaKnown RBP14.66□□□□□ -0.06
SHMT2-209ENST00000553949 TMEM39BQ9GZU3 492 aa14.66□□□□□ -0.06
SHMT2-209ENST00000553949 MKRN1Q9UHC7 482 aaKnown RBP14.66□□□□□ -0.06
SHMT2-209ENST00000553949 AK9Q5TCS8 1911 aa14.66□□□□□ -0.06
SHMT2-209ENST00000553949 HSPD1P10809 573 aaKnown RBP14.65□□□□□ -0.06
SHMT2-209ENST00000553949 PRAMEF18Q5VWM3 479 aa14.65□□□□□ -0.06
SHMT2-209ENST00000553949 GIMAP6Q6P9H5 292 aa14.65□□□□□ -0.06
SHMT2-209ENST00000553949 SH3BP5LQ7L8J4 393 aa14.65□□□□□ -0.06
SHMT2-209ENST00000553949 ZSCAN29Q8IWY8 852 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-209ENST00000553949 CDAN1Q8IWY9 1227 aa14.65□□□□□ -0.06
SHMT2-209ENST00000553949 DDRGK1Q96HY6 314 aa14.65□□□□□ -0.06
SHMT2-209ENST00000553949 TEPSINQ96N21 525 aa14.65□□□□□ -0.06
SHMT2-209ENST00000553949 NACAP1Q9BZK3 213 aa14.65□□□□□ -0.06
SHMT2-209ENST00000553949 EPB41L4AQ9HCS5 686 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-209ENST00000553949 SAP30BPQ9UHR5 308 aaKnown RBP14.65□□□□□ -0.06
SHMT2-209ENST00000553949 ATRNL1Q5VV63 1379 aa14.64□□□□□ -0.07
SHMT2-209ENST00000553949 DDTLA6NHG4 134 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-209ENST00000553949 TRAF5O00463 557 aa14.64□□□□□ -0.07
SHMT2-209ENST00000553949 ITGBL1O95965 494 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-209ENST00000553949 IFNL3Q8IZI9 196 aa14.64□□□□□ -0.07
SHMT2-209ENST00000553949 CDCA5Q96FF9 252 aa14.64□□□□□ -0.07
SHMT2-209ENST00000553949 DHX36Q9H2U1 1008 aaKnown RBP14.64□□□□□ -0.07
SHMT2-209ENST00000553949 MCM9Q9NXL9 1143 aa14.64□□□□□ -0.07
SHMT2-209ENST00000553949 PALD1Q9ULE6 856 aa14.64□□□□□ -0.07
SHMT2-209ENST00000553949 ECM29Q5VYK3 1845 aa14.64□□□□□ -0.07
SHMT2-209ENST00000553949 COL2A1P02458 1487 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-209ENST00000553949 POLR3DP05423 398 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-209ENST00000553949 TDO2P48775 406 aa14.63□□□□□ -0.07
SHMT2-209ENST00000553949 NBPF12Q5TAG4 269 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-209ENST00000553949 KIAA1211Q6ZU35 1233 aa14.63□□□□□ -0.07
SHMT2-209ENST00000553949 CSRNP1Q96S65 589 aa14.63□□□□□ -0.07
SHMT2-209ENST00000553949 DSCC1Q9BVC3 393 aa14.63□□□□□ -0.07
SHMT2-209ENST00000553949 NAPBQ9H115 298 aa14.63□□□□□ -0.07
SHMT2-209ENST00000553949 USP17L12C9JPN9 530 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 USP17L21D6R901 530 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 FGAP02671 866 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 PTH1RQ03431 593 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 FSTL1Q12841 308 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 ALX1Q15699 326 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 SLC4A8Q2Y0W8 1093 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 SUPT20HL1Q3ZLR7 823 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 CTR9Q6PD62 1173 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 ANO2Q9NQ90 1003 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 PI4KBQ9UBF8 816 aa14.62□□□□□ -0.07
SHMT2-209ENST00000553949 ARPP21Q9UBL0 812 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-209ENST00000553949 HLA-DOAP06340 250 aa14.61□□□□□ -0.07
SHMT2-209ENST00000553949 CYP2D6P10635 497 aa14.61□□□□□ -0.07
SHMT2-209ENST00000553949 FMR1Q06787 632 aaKnown RBP eCLIP14.61□□□□□ -0.07
SHMT2-209ENST00000553949 SBK1Q52WX2 424 aa14.61□□□□□ -0.07
SHMT2-209ENST00000553949 C12orf60Q5U649 245 aa14.61□□□□□ -0.07
SHMT2-209ENST00000553949 TTC6Q86TZ1 520 aa14.61□□□□□ -0.07
SHMT2-209ENST00000553949 AMOTL1Q8IY63 956 aa14.61□□□□□ -0.07
SHMT2-209ENST00000553949 LSG1Q9H089 658 aaKnown RBP14.61□□□□□ -0.07
SHMT2-209ENST00000553949 ZMYM6O95789 1325 aa14.61□□□□□ -0.07
SHMT2-209ENST00000553949 CYP2D7A0A087X1C5 515 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 MINDY4BA8MYZ0 360 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 PLCD1P51178 756 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 EVX2Q03828 476 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 C8orf34Q49A92 452 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 MIGA2Q7L4E1 593 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 MAP4K1Q92918 833 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 HOOK2Q96ED9 719 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 PASKQ96RG2 1323 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 SSC5DA1L4H1 1573 aa14.6□□□□□ -0.07
SHMT2-209ENST00000553949 SMIM22K7EJ46 135 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 TBC1D12O60347 775 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 REC8O95072 547 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 NF2P35240 595 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 METTL16Q86W50 562 aaKnown RBP14.59□□□□□ -0.07
SHMT2-209ENST00000553949 FOXP4Q8IVH2 680 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-209ENST00000553949 EHD4Q9H223 541 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 ZNF408Q9H9D4 720 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 CTNNA3Q9UI47 895 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 SERPINB13Q9UIV8 391 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 U3KPZ7 1027 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-209ENST00000553949 FOCADQ5VW36 1801 aa14.59□□□□□ -0.07
SHMT2-209ENST00000553949 DDX60LQ5H9U9 1706 aaKnown RBP14.58□□□□□ -0.07
SHMT2-209ENST00000553949 CELF2O95319 508 aaKnown RBP14.58□□□□□ -0.08
SHMT2-209ENST00000553949 SLURP2P0DP57 97 aa14.58□□□□□ -0.08
SHMT2-209ENST00000553949 MAP3K10Q02779 954 aa14.58□□□□□ -0.08
SHMT2-209ENST00000553949 PPARAQ07869 468 aa14.58□□□□□ -0.08
SHMT2-209ENST00000553949 DCAF15Q66K64 600 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms