RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 KBTBD3Q8NAB2 608 aa17.09■□□□□ 0.33
PTCH1-226ENST00000553011 HHIPL1Q96JK4 782 aa17.09■□□□□ 0.33
PTCH1-226ENST00000553011 CAPNS2Q96L46 248 aa17.09■□□□□ 0.33
PTCH1-226ENST00000553011 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.09■□□□□ 0.33
PTCH1-226ENST00000553011 BAZ2AQ9UIF9 1905 aaKnown RBP17.08■□□□□ 0.33
PTCH1-226ENST00000553011 NAV1Q8NEY1 1877 aa17.08■□□□□ 0.33
PTCH1-226ENST00000553011 SIPA1L1O43166 1804 aa17.08■□□□□ 0.33
PTCH1-226ENST00000553011 DDTLA6NHG4 134 aaPredicted RBP17.08■□□□□ 0.32
PTCH1-226ENST00000553011 USP2O75604 605 aaPredicted RBP17.08■□□□□ 0.32
PTCH1-226ENST00000553011 RGMBQ6NW40 437 aa17.08■□□□□ 0.32
PTCH1-226ENST00000553011 RIOK1Q9BRS2 568 aaKnown RBP17.08■□□□□ 0.32
PTCH1-226ENST00000553011 WDR33Q9C0J8 1336 aaKnown RBP17.07■□□□□ 0.32
PTCH1-226ENST00000553011 MAGEB6P1A0A0J9YX57 407 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 NPM3O75607 178 aaKnown RBP17.07■□□□□ 0.32
PTCH1-226ENST00000553011 PDE4AP27815 886 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 ZNF157P51786 506 aaPredicted RBP17.07■□□□□ 0.32
PTCH1-226ENST00000553011 MAP3K11Q16584 847 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 LDLRAD1Q5T700 205 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 MIGA2Q7L4E1 593 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 MAPKAPK5Q8IW41 473 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 ZSCAN29Q8IWY8 852 aaPredicted RBP17.07■□□□□ 0.32
PTCH1-226ENST00000553011 TGFBRAP1Q8WUH2 860 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 OSBPL5Q9H0X9 879 aaPredicted RBP17.07■□□□□ 0.32
PTCH1-226ENST00000553011 THSD7BQ9C0I4 1608 aa17.07■□□□□ 0.32
PTCH1-226ENST00000553011 FLT1P17948 1338 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 AOC2O75106 756 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 SLURP2P0DP57 97 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 ECE1P42892 770 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 IREB2P48200 963 aaKnown RBP17.06■□□□□ 0.32
PTCH1-226ENST00000553011 UBE3CQ15386 1083 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 ZSCAN25Q6NSZ9 544 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 LCORLQ8N3X6 602 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 CLMNQ96JQ2 1002 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 CSRNP1Q96S65 589 aa17.06■□□□□ 0.32
PTCH1-226ENST00000553011 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.06■□□□□ 0.32
PTCH1-226ENST00000553011 COL2A1P02458 1487 aaPredicted RBP17.05■□□□□ 0.32
PTCH1-226ENST00000553011 ATRNL1Q5VV63 1379 aa17.05■□□□□ 0.32
PTCH1-226ENST00000553011 DDX60LQ5H9U9 1706 aaKnown RBP17.05■□□□□ 0.32
PTCH1-226ENST00000553011 DCAF15Q66K64 600 aa17.05■□□□□ 0.32
PTCH1-226ENST00000553011 RASAL3Q86YV0 1011 aa17.05■□□□□ 0.32
PTCH1-226ENST00000553011 HOOK2Q96ED9 719 aa17.05■□□□□ 0.32
PTCH1-226ENST00000553011 FSD1Q9BTV5 496 aa17.05■□□□□ 0.32
PTCH1-226ENST00000553011 ARMT1Q9H993 441 aa17.05■□□□□ 0.32
PTCH1-226ENST00000553011 FAM155AB1AL88 458 aaPredicted RBP17.04■□□□□ 0.32
PTCH1-226ENST00000553011 RNF113AO15541 343 aaKnown RBP17.04■□□□□ 0.32
PTCH1-226ENST00000553011 MBD4O95243 580 aa17.04■□□□□ 0.32
PTCH1-226ENST00000553011 SLC10A3P09131 477 aa17.04■□□□□ 0.32
PTCH1-226ENST00000553011 USP5P45974 858 aa17.04■□□□□ 0.32
PTCH1-226ENST00000553011 CERS3Q8IU89 383 aa17.04■□□□□ 0.32
PTCH1-226ENST00000553011 JMYQ8N9B5 988 aa17.04■□□□□ 0.32
PTCH1-226ENST00000553011 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.04■□□□□ 0.32
PTCH1-226ENST00000553011 ZIC5Q96T25 663 aa17.04■□□□□ 0.32
PTCH1-226ENST00000553011 PUS7LQ9H0K6 701 aaKnown RBP17.04■□□□□ 0.32
PTCH1-226ENST00000553011 OSBPL3Q9H4L5 887 aa17.04■□□□□ 0.32
PTCH1-226ENST00000553011 SAP30BPQ9UHR5 308 aaKnown RBP17.04■□□□□ 0.32
PTCH1-226ENST00000553011 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.03■□□□□ 0.32
PTCH1-226ENST00000553011 ANKRD13AQ8IZ07 590 aa17.03■□□□□ 0.32
PTCH1-226ENST00000553011 CCDC102AQ96A19 550 aa17.03■□□□□ 0.32
PTCH1-226ENST00000553011 WRNIP1Q96S55 665 aa17.03■□□□□ 0.32
PTCH1-226ENST00000553011 ZNF341Q9BYN7 854 aa17.03■□□□□ 0.32
PTCH1-226ENST00000553011 CRNKL1Q9BZJ0 848 aaKnown RBP17.03■□□□□ 0.32
PTCH1-226ENST00000553011 ATAD5Q96QE3 1844 aa17.03■□□□□ 0.32
PTCH1-226ENST00000553011 PCNTO95613 3336 aa17.03■□□□□ 0.32
PTCH1-226ENST00000553011 ZFYP08048 801 aaPredicted RBP17.02■□□□□ 0.32
PTCH1-226ENST00000553011 INPP5BP32019 993 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 MAP3K9P80192 1104 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 SLC4A8Q2Y0W8 1093 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 SDR42E1Q8WUS8 393 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 APPBP2Q92624 585 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 OSBP2Q969R2 916 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 EVI5LQ96CN4 794 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 SLC10A4Q96EP9 437 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 PALD1Q9ULE6 856 aa17.02■□□□□ 0.32
PTCH1-226ENST00000553011 DOCK1Q14185 1865 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 FAM196BA6NMK8 535 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 TRIM6-TRIM34B2RNG4 842 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 PRKAB2O43741 272 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 MKRN3Q13064 507 aaKnown RBP17.01■□□□□ 0.31
PTCH1-226ENST00000553011 NOGQ13253 232 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 VGLL4Q14135 290 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 CENPQQ7L2Z9 268 aaPredicted RBP17.01■□□□□ 0.31
PTCH1-226ENST00000553011 ZKSCAN4Q969J2 545 aaPredicted RBP17.01■□□□□ 0.31
PTCH1-226ENST00000553011 AIDAQ96BJ3 306 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 CCDC136Q96JN2 1154 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 ELP3Q9H9T3 547 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 ZNF112Q9UJU3 913 aa17.01■□□□□ 0.31
PTCH1-226ENST00000553011 LAMB1P07942 1786 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 MYH8P13535 1937 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 UNCXA6NJT0 531 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 M0R2C6 588 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 MAP3K10Q02779 954 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 LRRFIP1Q32MZ4 808 aaKnown RBP17■□□□□ 0.31
PTCH1-226ENST00000553011 CNKSR2Q8WXI2 1034 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 RILPL2Q969X0 211 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 SEC62Q99442 399 aaKnown RBP17■□□□□ 0.31
PTCH1-226ENST00000553011 DHX36Q9H2U1 1008 aaKnown RBP17■□□□□ 0.31
PTCH1-226ENST00000553011 SNCAIPQ9Y6H5 919 aa17■□□□□ 0.31
PTCH1-226ENST00000553011 PHF20L1A8MW92 1017 aa16.99■□□□□ 0.31
PTCH1-226ENST00000553011 GJA5P36382 358 aa16.99■□□□□ 0.31
PTCH1-226ENST00000553011 MAP2K2P36507 400 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms