RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 PHIPQ8WWQ0 1821 aa18.33■□□□□ 0.53
VPS29-209ENST00000551655 MYBBP1AQ9BQG0 1328 aaKnown RBP18.33■□□□□ 0.53
VPS29-209ENST00000551655 FRAT2O75474 233 aaPredicted RBP18.33■□□□□ 0.52
VPS29-209ENST00000551655 CCDC84Q86UT8 332 aaPredicted RBP18.33■□□□□ 0.52
VPS29-209ENST00000551655 VPS37DQ86XT2 251 aa18.33■□□□□ 0.52
VPS29-209ENST00000551655 ZFPM1Q8IX07 1006 aa18.33■□□□□ 0.52
VPS29-209ENST00000551655 COA7Q96BR5 231 aa18.33■□□□□ 0.52
VPS29-209ENST00000551655 PLXNB2O15031 1838 aa18.33■□□□□ 0.52
VPS29-209ENST00000551655 DOCK2Q92608 1830 aa18.33■□□□□ 0.52
VPS29-209ENST00000551655 HMGCRP04035 888 aa18.32■□□□□ 0.52
VPS29-209ENST00000551655 CALD1Q05682 793 aaKnown RBP18.32■□□□□ 0.52
VPS29-209ENST00000551655 FAM109BQ6ICB4 259 aaPredicted RBP18.32■□□□□ 0.52
VPS29-209ENST00000551655 MAFAQ8NHW3 353 aaPredicted RBP18.32■□□□□ 0.52
VPS29-209ENST00000551655 TBC1D22AQ8WUA7 517 aa18.32■□□□□ 0.52
VPS29-209ENST00000551655 CHMP4AQ9BY43 222 aa18.32■□□□□ 0.52
VPS29-209ENST00000551655 HMX1Q9NP08 348 aaPredicted RBP18.32■□□□□ 0.52
VPS29-209ENST00000551655 F6X3S4 739 aa18.31■□□□□ 0.52
VPS29-209ENST00000551655 LRRC26Q2I0M4 334 aa18.31■□□□□ 0.52
VPS29-209ENST00000551655 TWISTNBQ3B726 338 aaPredicted RBP18.31■□□□□ 0.52
VPS29-209ENST00000551655 CDC42EP5Q6NZY7 148 aa18.31■□□□□ 0.52
VPS29-209ENST00000551655 FASTKD5Q7L8L6 764 aaKnown RBP18.31■□□□□ 0.52
VPS29-209ENST00000551655 CDX2Q99626 313 aaPredicted RBP18.31■□□□□ 0.52
VPS29-209ENST00000551655 FAM198AQ9UFP1 575 aa18.31■□□□□ 0.52
VPS29-209ENST00000551655 OGDHLQ9ULD0 1010 aa18.31■□□□□ 0.52
VPS29-209ENST00000551655 PHF20L1A8MW92 1017 aa18.3■□□□□ 0.52
VPS29-209ENST00000551655 PTPRAP18433 802 aa18.3■□□□□ 0.52
VPS29-209ENST00000551655 TREML2Q5T2D2 321 aa18.3■□□□□ 0.52
VPS29-209ENST00000551655 HHIPL2Q6UWX4 724 aa18.3■□□□□ 0.52
VPS29-209ENST00000551655 SCYL3Q8IZE3 742 aa18.3■□□□□ 0.52
VPS29-209ENST00000551655 AFG3L2Q9Y4W6 797 aa18.3■□□□□ 0.52
VPS29-209ENST00000551655 ATRNL1Q5VV63 1379 aa18.3■□□□□ 0.52
VPS29-209ENST00000551655 DOCK1Q14185 1865 aa18.29■□□□□ 0.52
VPS29-209ENST00000551655 TRIM75PA6NK02 468 aa18.29■□□□□ 0.52
VPS29-209ENST00000551655 DIXDC1Q155Q3 683 aa18.29■□□□□ 0.52
VPS29-209ENST00000551655 ZNF697Q5TEC3 545 aa18.29■□□□□ 0.52
VPS29-209ENST00000551655 TRIB2Q92519 343 aa18.29■□□□□ 0.52
VPS29-209ENST00000551655 MRIQ9BWK5 157 aa18.29■□□□□ 0.52
VPS29-209ENST00000551655 DAGLAQ9Y4D2 1042 aa18.29■□□□□ 0.52
VPS29-209ENST00000551655 MYH13Q9UKX3 1938 aa18.28■□□□□ 0.52
VPS29-209ENST00000551655 BEND3Q5T5X7 828 aa18.28■□□□□ 0.52
VPS29-209ENST00000551655 MYLIPQ8WY64 445 aa18.28■□□□□ 0.52
VPS29-209ENST00000551655 PICK1Q9NRD5 415 aa18.28■□□□□ 0.52
VPS29-209ENST00000551655 GJD2Q9UKL4 321 aa18.28■□□□□ 0.52
VPS29-209ENST00000551655 SLC45A1Q9Y2W3 748 aa18.28■□□□□ 0.52
VPS29-209ENST00000551655 MAST3O60307 1309 aa18.27■□□□□ 0.52
VPS29-209ENST00000551655 COL6A1P12109 1028 aa18.27■□□□□ 0.52
VPS29-209ENST00000551655 FAM110CQ1W6H9 321 aa18.27■□□□□ 0.52
VPS29-209ENST00000551655 LRRC24Q50LG9 513 aa18.27■□□□□ 0.52
VPS29-209ENST00000551655 SPINK5Q9NQ38 1064 aaPredicted RBP18.27■□□□□ 0.52
VPS29-209ENST00000551655 PRKAR2AP13861 404 aaKnown RBP18.26■□□□□ 0.51
VPS29-209ENST00000551655 CAVIN4Q5BKX8 364 aa18.26■□□□□ 0.51
VPS29-209ENST00000551655 AGTPBP1Q9UPW5 1226 aa18.26■□□□□ 0.51
VPS29-209ENST00000551655 MAST2Q6P0Q8 1798 aa18.26■□□□□ 0.51
VPS29-209ENST00000551655 GRM8O00222 908 aa18.25■□□□□ 0.51
VPS29-209ENST00000551655 PEX10O60683 326 aa18.25■□□□□ 0.51
VPS29-209ENST00000551655 CYP2B6P20813 491 aa18.25■□□□□ 0.51
VPS29-209ENST00000551655 MROH5Q6ZUA9 1318 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 LTBP2Q14767 1821 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 METTL24Q5JXM2 366 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 SH3BP5LQ7L8J4 393 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 KAZALD1Q96I82 304 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 SUCLG2Q96I99 432 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 SEMA6BQ9H3T3 888 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 USP40Q9NVE5 1235 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 LOC285556D6RIA3 1793 aa18.24■□□□□ 0.51
VPS29-209ENST00000551655 FRMPD3Q5JV73 1810 aa18.23■□□□□ 0.51
VPS29-209ENST00000551655 MAP3K21Q5TCX8 1036 aa18.23■□□□□ 0.51
VPS29-209ENST00000551655 VGLL2Q8N8G2 317 aa18.23■□□□□ 0.51
VPS29-209ENST00000551655 TTYH1Q9H313 450 aaPredicted RBP18.23■□□□□ 0.51
VPS29-209ENST00000551655 SUGT1Q9Y2Z0 365 aa18.23■□□□□ 0.51
VPS29-209ENST00000551655 PRDX5P30044 214 aa18.22■□□□□ 0.51
VPS29-209ENST00000551655 CCND3P30281 292 aaPredicted RBP18.22■□□□□ 0.51
VPS29-209ENST00000551655 RGS3P49796 1198 aa18.22■□□□□ 0.51
VPS29-209ENST00000551655 CACNA1FO60840 1977 aa18.21■□□□□ 0.51
VPS29-209ENST00000551655 C9orf50Q5SZB4 431 aa18.21■□□□□ 0.51
VPS29-209ENST00000551655 KLHDC4Q8TBB5 520 aa18.21■□□□□ 0.51
VPS29-209ENST00000551655 LBHD1Q9BQE6 289 aaPredicted RBP18.21■□□□□ 0.51
VPS29-209ENST00000551655 C9orf78Q9NZ63 289 aaPredicted RBP18.21■□□□□ 0.51
VPS29-209ENST00000551655 LRRFIP2Q9Y608 721 aaKnown RBP18.21■□□□□ 0.51
VPS29-209ENST00000551655 DDTLA6NHG4 134 aaPredicted RBP18.2■□□□□ 0.5
VPS29-209ENST00000551655 PDE8BO95263 885 aa18.2■□□□□ 0.5
VPS29-209ENST00000551655 CACNB2Q08289 660 aaPredicted RBP18.2■□□□□ 0.5
VPS29-209ENST00000551655 SHHQ15465 462 aa18.2■□□□□ 0.5
VPS29-209ENST00000551655 LHX8Q68G74 356 aa18.2■□□□□ 0.5
VPS29-209ENST00000551655 ZSCAN29Q8IWY8 852 aaPredicted RBP18.2■□□□□ 0.5
VPS29-209ENST00000551655 PNMA3Q9UL41 463 aa18.2■□□□□ 0.5
VPS29-209ENST00000551655 FAM196BA6NMK8 535 aa18.19■□□□□ 0.5
VPS29-209ENST00000551655 FOSL2P15408 326 aa18.19■□□□□ 0.5
VPS29-209ENST00000551655 USP38Q8NB14 1042 aa18.19■□□□□ 0.5
VPS29-209ENST00000551655 SYMPKQ92797 1274 aaKnown RBP18.19■□□□□ 0.5
VPS29-209ENST00000551655 TNFRSF10AO00220 468 aa18.18■□□□□ 0.5
VPS29-209ENST00000551655 ZEB1P37275 1124 aaPredicted RBP18.18■□□□□ 0.5
VPS29-209ENST00000551655 ATN1P54259 1190 aaPredicted RBP18.18■□□□□ 0.5
VPS29-209ENST00000551655 HMGCS2P54868 508 aa18.18■□□□□ 0.5
VPS29-209ENST00000551655 CCL14Q16627 93 aa18.18■□□□□ 0.5
VPS29-209ENST00000551655 PPP4R3CPQ6ZMV5 832 aa18.18■□□□□ 0.5
VPS29-209ENST00000551655 ASCC2Q9H1I8 757 aaPredicted RBP18.18■□□□□ 0.5
VPS29-209ENST00000551655 DDX4Q9NQI0 724 aaKnown RBP18.18■□□□□ 0.5
VPS29-209ENST00000551655 ATAD5Q96QE3 1844 aa18.18■□□□□ 0.5
VPS29-209ENST00000551655 RFX7Q2KHR2 1363 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms