RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 MCM4P33991 863 aa7.57□□□□□ -1.2
LIMA1-205ENST00000550592 CDK8P49336 464 aa7.57□□□□□ -1.2
LIMA1-205ENST00000550592 ZC3H12AQ5D1E8 599 aaKnown RBP7.57□□□□□ -1.2
LIMA1-205ENST00000550592 CYFIP1Q7L576 1253 aa7.57□□□□□ -1.2
LIMA1-205ENST00000550592 HDXQ7Z353 690 aa7.57□□□□□ -1.2
LIMA1-205ENST00000550592 UBASH3BQ8TF42 649 aa7.57□□□□□ -1.2
LIMA1-205ENST00000550592 WDR18Q9BV38 432 aa7.57□□□□□ -1.2
LIMA1-205ENST00000550592 HIRIP3Q9BW71 556 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-205ENST00000550592 TMPRSS13Q9BYE2 586 aa7.57□□□□□ -1.2
LIMA1-205ENST00000550592 POLR3KQ9Y2Y1 108 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-205ENST00000550592 PRR36Q9H6K5 1346 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 STK10O94804 968 aaKnown RBP7.56□□□□□ -1.2
LIMA1-205ENST00000550592 ATE1O95260 518 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 ELNP15502 786 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 CLCQ05315 142 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 SOGA3Q5TF21 947 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 LRFN4Q6PJG9 635 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 KIAA1211Q6ZU35 1233 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 BEND7Q8N7W2 519 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-205ENST00000550592 ZSCAN1Q8NBB4 408 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 PLPPR2Q96GM1 343 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 SHDQ96IW2 340 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 SRRTQ9BXP5 876 aaKnown RBP7.56□□□□□ -1.2
LIMA1-205ENST00000550592 NOP53Q9NZM5 478 aaKnown RBP7.56□□□□□ -1.2
LIMA1-205ENST00000550592 PPT2Q9UMR5 302 aa7.56□□□□□ -1.2
LIMA1-205ENST00000550592 LOC105371045A0A1W2PR82 267 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 WISP1O95388 367 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 IMPDH2P12268 514 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 RING1Q06587 406 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 WIPI1Q5MNZ9 446 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-205ENST00000550592 GK5Q6ZS86 529 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 TMEM130Q8N3G9 435 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 CPLX3Q8WVH0 158 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 DNAJC2Q99543 621 aaKnown RBP7.55□□□□□ -1.2
LIMA1-205ENST00000550592 RUSC1Q9BVN2 902 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 MRPL18Q9H0U6 180 aaKnown RBP7.55□□□□□ -1.2
LIMA1-205ENST00000550592 ZNF408Q9H9D4 720 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 SUGCTQ9HAC7 445 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 RAD18Q9NS91 495 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 ZNRF3Q9ULT6 936 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 PCDHB14Q9Y5E9 798 aa7.55□□□□□ -1.2
LIMA1-205ENST00000550592 ETFBP38117 255 aa7.54□□□□□ -1.2
LIMA1-205ENST00000550592 GIPRP48546 466 aa7.54□□□□□ -1.2
LIMA1-205ENST00000550592 PRRT3Q5FWE3 981 aa7.54□□□□□ -1.2
LIMA1-205ENST00000550592 RBBP8NLQ8NC74 664 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-205ENST00000550592 SMG8Q8ND04 991 aaKnown RBP7.54□□□□□ -1.2
LIMA1-205ENST00000550592 ELMO3Q96BJ8 720 aa7.54□□□□□ -1.2
LIMA1-205ENST00000550592 RNF208Q9H0X6 261 aa7.54□□□□□ -1.2
LIMA1-205ENST00000550592 ADAMTS8Q9UP79 889 aa7.54□□□□□ -1.2
LIMA1-205ENST00000550592 CNTNAP5Q8WYK1 1306 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 DCDC2CA8MYV0 355 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 FAM229AH3BQW9 127 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 EIF6P56537 245 aaKnown RBP7.53□□□□□ -1.2
LIMA1-205ENST00000550592 ERVK-24P63145 666 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 ID3Q02535 119 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 NUTM2GQ5VZR2 741 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 CCDC81Q6ZN84 652 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 ACAD11Q709F0 780 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.53□□□□□ -1.2
LIMA1-205ENST00000550592 PODNQ7Z5L7 613 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 C12orf40Q86WS4 652 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 FERD3LQ96RJ6 166 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 CRIM1Q9NZV1 1036 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 PPP1R9AQ9ULJ8 1098 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 MRVI1Q9Y6F6 885 aa7.53□□□□□ -1.2
LIMA1-205ENST00000550592 SHROOM4Q9ULL8 1493 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 TMPRSS2O15393 492 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 GRIN3BO60391 1043 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 DPH6Q7L8W6 267 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 OR6P1Q8NGX9 317 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 CRBNQ96SW2 442 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 CYP4F12Q9HCS2 524 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 HIF3AQ9Y2N7 669 aa7.52□□□□□ -1.21
LIMA1-205ENST00000550592 F8W735 103 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-205ENST00000550592 HTR3BO95264 441 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 PDE4BQ07343 736 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 GRIK4Q16099 956 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 LRRFIP1Q32MZ4 808 aaKnown RBP7.51□□□□□ -1.21
LIMA1-205ENST00000550592 AKAP4Q5JQC9 854 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 TMEM201Q5SNT2 666 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 NBPF6Q5VWK0 638 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 CKAP2LQ8IYA6 745 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 LENG1Q96BZ8 264 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-205ENST00000550592 ANAPC16Q96DE5 110 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 NBPF4Q96M43 638 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 LNPKQ9C0E8 428 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 WNT10AQ9GZT5 417 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 DISC1Q9NRI5 854 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 PRKAG3Q9UGI9 489 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 CORINQ9Y5Q5 1042 aa7.51□□□□□ -1.21
LIMA1-205ENST00000550592 FANCGO15287 622 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 KLF4O43474 513 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 TIAF1O95411 115 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 SPATA31C1P0DKV0 1188 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 SOX4Q06945 474 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-205ENST00000550592 FBXW10Q5XX13 1052 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 SHISA2Q6UWI4 295 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 ANKS3Q6ZW76 656 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 FANCD2OSQ96PS1 177 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 GSX1Q9H4S2 264 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms