RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TCP10L2B9ZVM9 353 aa13.37□□□□□ -0.27
VPS29-208ENST00000550267 PLIN1O60240 522 aa13.37□□□□□ -0.27
VPS29-208ENST00000550267 GTF2A2P52657 109 aa13.37□□□□□ -0.27
VPS29-208ENST00000550267 MYH16Q9H6N6 1097 aa13.37□□□□□ -0.27
VPS29-208ENST00000550267 CHMP3Q9Y3E7 222 aa13.37□□□□□ -0.27
VPS29-208ENST00000550267 MAP3K7O43318 606 aa13.36□□□□□ -0.27
VPS29-208ENST00000550267 FOXO4P98177 505 aa13.36□□□□□ -0.27
VPS29-208ENST00000550267 FLIIQ13045 1269 aa13.36□□□□□ -0.27
VPS29-208ENST00000550267 IFIT5Q13325 482 aaKnown RBP13.36□□□□□ -0.27
VPS29-208ENST00000550267 TSR1Q2NL82 804 aaKnown RBP13.36□□□□□ -0.27
VPS29-208ENST00000550267 TWISTNBQ3B726 338 aaPredicted RBP13.36□□□□□ -0.27
VPS29-208ENST00000550267 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.36□□□□□ -0.27
VPS29-208ENST00000550267 DNAAF4Q8WXU2 420 aa13.36□□□□□ -0.27
VPS29-208ENST00000550267 TMEM39BQ9GZU3 492 aa13.36□□□□□ -0.27
VPS29-208ENST00000550267 TTF2Q9UNY4 1162 aaKnown RBP13.36□□□□□ -0.27
VPS29-208ENST00000550267 ZSWIM8A7E2V4 1837 aa13.36□□□□□ -0.27
VPS29-208ENST00000550267 FAM205AQ6ZU69 1335 aa13.36□□□□□ -0.27
VPS29-208ENST00000550267 LACTBP83111 547 aaPredicted RBP13.35□□□□□ -0.27
VPS29-208ENST00000550267 FKBP5Q13451 457 aaPredicted RBP13.35□□□□□ -0.27
VPS29-208ENST00000550267 MFSD14BQ5SR56 506 aa13.35□□□□□ -0.27
VPS29-208ENST00000550267 DZIP1LQ8IYY4 767 aaKnown RBP13.35□□□□□ -0.27
VPS29-208ENST00000550267 LINS1Q8NG48 757 aa13.35□□□□□ -0.27
VPS29-208ENST00000550267 ZNF594Q96JF6 807 aaPredicted RBP13.35□□□□□ -0.27
VPS29-208ENST00000550267 SERPINA10Q9UK55 444 aa13.35□□□□□ -0.27
VPS29-208ENST00000550267 CSADQ9Y600 493 aa13.35□□□□□ -0.27
VPS29-208ENST00000550267 TLR2O60603 784 aa13.34□□□□□ -0.27
VPS29-208ENST00000550267 KIF22Q14807 665 aa13.34□□□□□ -0.27
VPS29-208ENST00000550267 TDRD7Q8NHU6 1098 aaKnown RBP13.34□□□□□ -0.27
VPS29-208ENST00000550267 SHISA4Q96DD7 197 aa13.34□□□□□ -0.27
VPS29-208ENST00000550267 RBM27Q9P2N5 1060 aaKnown RBP13.34□□□□□ -0.27
VPS29-208ENST00000550267 SNCAIPQ9Y6H5 919 aa13.34□□□□□ -0.27
VPS29-208ENST00000550267 SPDYE5A6NIY4 337 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 BTBD19C9JJ37 291 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 WDHD1O75717 1129 aaPredicted RBP13.33□□□□□ -0.28
VPS29-208ENST00000550267 CRKP46108 304 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 GYG1P46976 350 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 TNNI2P48788 182 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 MTFR1Q15390 333 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 GRIK5Q16478 980 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 EPHA10Q5JZY3 1008 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 LMBR1LQ6UX01 489 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 LDHAL6AQ6ZMR3 332 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 DPF3Q92784 378 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 CNNM1Q9NRU3 951 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 ARAP2Q8WZ64 1704 aa13.33□□□□□ -0.28
VPS29-208ENST00000550267 CETPP11597 493 aa13.32□□□□□ -0.28
VPS29-208ENST00000550267 HIBADHP31937 336 aaKnown RBP13.32□□□□□ -0.28
VPS29-208ENST00000550267 CACNB3P54284 484 aa13.32□□□□□ -0.28
VPS29-208ENST00000550267 TAF7LQ5H9L4 462 aa13.32□□□□□ -0.28
VPS29-208ENST00000550267 KIAA0100Q14667 2235 aaKnown RBP13.31□□□□□ -0.28
VPS29-208ENST00000550267 CTGFP29279 349 aa13.31□□□□□ -0.28
VPS29-208ENST00000550267 PRMT2P55345 433 aa13.31□□□□□ -0.28
VPS29-208ENST00000550267 CCDC57Q2TAC2 916 aa13.31□□□□□ -0.28
VPS29-208ENST00000550267 ERO1BQ86YB8 467 aa13.31□□□□□ -0.28
VPS29-208ENST00000550267 ZKSCAN4Q969J2 545 aaPredicted RBP13.31□□□□□ -0.28
VPS29-208ENST00000550267 FAM84BQ96KN1 310 aaPredicted RBP13.31□□□□□ -0.28
VPS29-208ENST00000550267 WRNIP1Q96S55 665 aa13.31□□□□□ -0.28
VPS29-208ENST00000550267 PRKRIP1Q9H875 184 aaPredicted RBP13.31□□□□□ -0.28
VPS29-208ENST00000550267 ZCCHC17Q9NP64 241 aaKnown RBP13.31□□□□□ -0.28
VPS29-208ENST00000550267 F6X3S4 739 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 IRF6O14896 467 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 GNRH1P01148 92 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 SNAPC2Q13487 334 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 UBE4AQ14139 1066 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 SPRYD3Q8NCJ5 442 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 CDCA7LQ96GN5 454 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 CPA4Q9UI42 421 aa13.3□□□□□ -0.28
VPS29-208ENST00000550267 ARIH1Q9Y4X5 557 aaPredicted RBP13.3□□□□□ -0.28
VPS29-208ENST00000550267 OSBPP22059 807 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 PSMC4P43686 418 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 PRSS12P56730 875 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 CHAF1AQ13111 956 aaPredicted RBP13.29□□□□□ -0.28
VPS29-208ENST00000550267 PPIL2Q13356 520 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 BEND3Q5T5X7 828 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 C17orf99Q6UX52 265 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 TRIM47Q96LD4 638 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 PUS3Q9BZE2 481 aaKnown RBP13.29□□□□□ -0.28
VPS29-208ENST00000550267 SRRDQ9UH36 339 aa13.29□□□□□ -0.28
VPS29-208ENST00000550267 IQSEC3Q9UPP2 1182 aaPredicted RBP13.29□□□□□ -0.28
VPS29-208ENST00000550267 SZT2Q5T011 3432 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 CCL5P13501 91 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 GRK4P32298 578 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 PPP4CP60510 307 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 E2F4Q16254 413 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 UBE2Q1Q7Z7E8 422 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 WWC1Q8IX03 1113 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 PRO3102Q9H379 93 aa13.28□□□□□ -0.28
VPS29-208ENST00000550267 DLL1O00548 723 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 FMNL1O95466 1100 aaPredicted RBP13.27□□□□□ -0.29
VPS29-208ENST00000550267 GJB1P08034 283 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 GJA8P48165 433 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 CCDC27Q2M243 656 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.27□□□□□ -0.29
VPS29-208ENST00000550267 NKX2-3Q8TAU0 364 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 RAET1EQ8TD07 263 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 TEKT1Q969V4 418 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 HTATIP2Q9BUP3 242 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 RIPOR2Q9Y4F9 1068 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 MYPNQ86TC9 1320 aa13.27□□□□□ -0.29
VPS29-208ENST00000550267 GRM8O00222 908 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms