RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 TNNI3KQ59H18 835 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 ANKRD23Q86SG2 305 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 FAM43AQ8N2R8 423 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 NSUN4Q96CB9 384 aaKnown RBP13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 NOL10Q9BSC4 688 aaKnown RBP13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 CHMP4BQ9H444 224 aaKnown RBP13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 RAI14Q9P0K7 980 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 KCNH4Q9UQ05 1017 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 PTPN22Q9Y2R2 807 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 FPGT-TNNI3KV9GXZ4 949 aa13.36□□□□□ -0.27
VTI1BP3-201ENST00000550220 BTBD19C9JJ37 291 aa13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 TBC1D12O60347 775 aa13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 CTNND1O60716 968 aaKnown RBP13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 PLCG2P16885 1265 aa13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 TTC39AQ5SRH9 613 aa13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 TMED8Q6PL24 325 aaPredicted RBP13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 ERC1Q8IUD2 1116 aa13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 CD99L2Q8TCZ2 262 aa13.35□□□□□ -0.27
VTI1BP3-201ENST00000550220 PRMT2P55345 433 aa13.34□□□□□ -0.27
VTI1BP3-201ENST00000550220 HSP90AB4PQ58FF6 505 aa13.34□□□□□ -0.27
VTI1BP3-201ENST00000550220 FASTKD5Q7L8L6 764 aaKnown RBP13.34□□□□□ -0.27
VTI1BP3-201ENST00000550220 NBPF11Q86T75 865 aa13.34□□□□□ -0.27
VTI1BP3-201ENST00000550220 ZFPM1Q8IX07 1006 aa13.34□□□□□ -0.27
VTI1BP3-201ENST00000550220 SCYL3Q8IZE3 742 aa13.34□□□□□ -0.27
VTI1BP3-201ENST00000550220 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.34□□□□□ -0.27
VTI1BP3-201ENST00000550220 PHF20L1A8MW92 1017 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 HOXD10P28358 340 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 MCAMP43121 646 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 RHBDL3P58872 404 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 PICALMQ13492 652 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 TBC1D9Q6ZT07 1266 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 CERS3Q8IU89 383 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 TBC1D2Q9BYX2 928 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 ZHX2Q9Y6X8 837 aa13.33□□□□□ -0.28
VTI1BP3-201ENST00000550220 DDTLA6NHG4 134 aaPredicted RBP13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 PDHXO00330 501 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 RLBP1P12271 317 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 PTPRAP18433 802 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 NAA16Q6N069 864 aaPredicted RBP13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 ARMC5Q96C12 935 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 PARK7Q99497 189 aaKnown RBP13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 DBNDD2Q9BQY9 259 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 DHX36Q9H2U1 1008 aaKnown RBP13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 C1orf115Q9H7X2 142 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 SLC45A1Q9Y2W3 748 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 RFX7Q2KHR2 1363 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 ATRNL1Q5VV63 1379 aa13.32□□□□□ -0.28
VTI1BP3-201ENST00000550220 PPP4CP60510 307 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 LACTBP83111 547 aaPredicted RBP13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 CEP85Q6P2H3 762 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 C17orf99Q6UX52 265 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 PI16Q6UXB8 463 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 SH3BP5LQ7L8J4 393 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 RPAP2Q8IXW5 612 aaPredicted RBP13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 ZNF384Q8TF68 577 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 OSBPL5Q9H0X9 879 aaPredicted RBP13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 DDX4Q9NQI0 724 aaKnown RBP13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 PI4KBQ9UBF8 816 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 DDX19BQ9UMR2 479 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 AFG3L2Q9Y4W6 797 aa13.31□□□□□ -0.28
VTI1BP3-201ENST00000550220 A0A0G2JLL6 359 aaPredicted RBP13.3□□□□□ -0.28
VTI1BP3-201ENST00000550220 HMMRO75330 724 aa13.3□□□□□ -0.28
VTI1BP3-201ENST00000550220 PRRT2Q7Z6L0 340 aaPredicted RBP13.3□□□□□ -0.28
VTI1BP3-201ENST00000550220 FOXP4Q8IVH2 680 aaPredicted RBP13.3□□□□□ -0.28
VTI1BP3-201ENST00000550220 TEX11Q8IYF3 940 aa13.3□□□□□ -0.28
VTI1BP3-201ENST00000550220 TMEM106CQ9BVX2 250 aa13.3□□□□□ -0.28
VTI1BP3-201ENST00000550220 HERC5Q9UII4 1024 aaKnown RBP13.3□□□□□ -0.28
VTI1BP3-201ENST00000550220 CYP2E1P05181 493 aaPredicted RBP13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 SLC9C1Q4G0N8 1177 aa13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 PANK1Q8TE04 598 aa13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 EAF2Q96CJ1 260 aaPredicted RBP13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 SNRKQ9NRH2 765 aa13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 DBNLQ9UJU6 430 aaKnown RBP13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 LAMB1P07942 1786 aa13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 COL2A1P02458 1487 aaPredicted RBP13.29□□□□□ -0.28
VTI1BP3-201ENST00000550220 MAP3K12Q12852 859 aa13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 MOGSQ13724 837 aa13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 TRIM34Q9BYJ4 488 aa13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 CCDC8Q9H0W5 538 aaPredicted RBP13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 AS3MTQ9HBK9 375 aa13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 GINM1Q9NU53 330 aa13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 AATFQ9NY61 560 aaKnown RBP eCLIP13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 CPA4Q9UI42 421 aa13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 MYH13Q9UKX3 1938 aa13.28□□□□□ -0.28
VTI1BP3-201ENST00000550220 OTOFQ9HC10 1997 aa13.27□□□□□ -0.28
VTI1BP3-201ENST00000550220 FMNL1O95466 1100 aaPredicted RBP13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 ZAP70P43403 619 aa13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 PABPC4Q13310 644 aaKnown RBP eCLIP13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 GPAT2Q6NUI2 795 aa13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 AACSQ86V21 672 aa13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 CLASRPQ8N2M8 674 aaKnown RBP13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 SH3RF3Q8TEJ3 882 aaPredicted RBP13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 KIF1BPQ96EK5 621 aa13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 ZNF333Q96JL9 665 aa13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 PNMA3Q9UL41 463 aa13.27□□□□□ -0.29
VTI1BP3-201ENST00000550220 USP17L5A8MUK1 530 aa13.26□□□□□ -0.29
VTI1BP3-201ENST00000550220 RAB11FIP3O75154 756 aa13.26□□□□□ -0.29
VTI1BP3-201ENST00000550220 HLA-DOAP06340 250 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms