RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 CCDC85CA6NKD9 419 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 APBB1O00213 710 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 INPP5BP32019 993 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 GTF2A2P52657 109 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 CCL15Q16663 113 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 C20orf194Q5TEA3 1177 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 ERO1BQ86YB8 467 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 NOL10Q9BSC4 688 aaKnown RBP17.99■□□□□ 0.47
LINC00661-203ENST00000549131 R3HDMLQ9H3Y0 253 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 IL1RAPL2Q9NP60 686 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 DDX4Q9NQI0 724 aaKnown RBP17.99■□□□□ 0.47
LINC00661-203ENST00000549131 SIPA1L1O43166 1804 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 PHIPQ8WWQ0 1821 aa17.99■□□□□ 0.47
LINC00661-203ENST00000549131 MYH1P12882 1939 aa17.98■□□□□ 0.47
LINC00661-203ENST00000549131 ZAP70P43403 619 aa17.98■□□□□ 0.47
LINC00661-203ENST00000549131 RHBDL3P58872 404 aa17.98■□□□□ 0.47
LINC00661-203ENST00000549131 NOM1Q5C9Z4 860 aaKnown RBP17.98■□□□□ 0.47
LINC00661-203ENST00000549131 NAA16Q6N069 864 aaPredicted RBP17.98■□□□□ 0.47
LINC00661-203ENST00000549131 RPAP2Q8IXW5 612 aaPredicted RBP17.98■□□□□ 0.47
LINC00661-203ENST00000549131 MS4A4AQ96JQ5 239 aa17.98■□□□□ 0.47
LINC00661-203ENST00000549131 ZNF512BQ96KM6 892 aaPredicted RBP17.98■□□□□ 0.47
LINC00661-203ENST00000549131 BCL11AQ9H165 835 aa17.98■□□□□ 0.47
LINC00661-203ENST00000549131 ATRNL1Q5VV63 1379 aa17.98■□□□□ 0.47
LINC00661-203ENST00000549131 MYH7P12883 1935 aa17.98■□□□□ 0.47
LINC00661-203ENST00000549131 TESPA1A2RU30 521 aaPredicted RBP17.97■□□□□ 0.47
LINC00661-203ENST00000549131 FKTNO75072 461 aa17.97■□□□□ 0.47
LINC00661-203ENST00000549131 CYP2E1P05181 493 aaPredicted RBP17.97■□□□□ 0.47
LINC00661-203ENST00000549131 CRHR2Q13324 411 aa17.97■□□□□ 0.47
LINC00661-203ENST00000549131 PDE3AQ14432 1141 aa17.97■□□□□ 0.47
LINC00661-203ENST00000549131 RHPN1Q8TCX5 695 aa17.97■□□□□ 0.47
LINC00661-203ENST00000549131 BRI3BPQ8WY22 251 aa17.97■□□□□ 0.47
LINC00661-203ENST00000549131 PTPN18Q99952 460 aa17.97■□□□□ 0.47
LINC00661-203ENST00000549131 COL2A1P02458 1487 aaPredicted RBP17.96■□□□□ 0.47
LINC00661-203ENST00000549131 DDTLA6NHG4 134 aaPredicted RBP17.96■□□□□ 0.47
LINC00661-203ENST00000549131 IRF6O14896 467 aa17.96■□□□□ 0.47
LINC00661-203ENST00000549131 PPIL2Q13356 520 aa17.96■□□□□ 0.47
LINC00661-203ENST00000549131 SH3BP5LQ7L8J4 393 aa17.96■□□□□ 0.47
LINC00661-203ENST00000549131 TEX11Q8IYF3 940 aa17.96■□□□□ 0.47
LINC00661-203ENST00000549131 NAV1Q8NEY1 1877 aa17.96■□□□□ 0.47
LINC00661-203ENST00000549131 CETPP11597 493 aa17.95■□□□□ 0.46
LINC00661-203ENST00000549131 SNAPC2Q13487 334 aa17.95■□□□□ 0.46
LINC00661-203ENST00000549131 SIRT2Q8IXJ6 389 aa17.95■□□□□ 0.46
LINC00661-203ENST00000549131 KIF1BPQ96EK5 621 aa17.95■□□□□ 0.46
LINC00661-203ENST00000549131 PIH1D3Q9NQM4 214 aaKnown RBP17.95■□□□□ 0.46
LINC00661-203ENST00000549131 AATFQ9NY61 560 aaKnown RBP eCLIP17.95■□□□□ 0.46
LINC00661-203ENST00000549131 ZNF112Q9UJU3 913 aa17.95■□□□□ 0.46
LINC00661-203ENST00000549131 NDUFB9Q9Y6M9 179 aa17.95■□□□□ 0.46
LINC00661-203ENST00000549131 ZSWIM8A7E2V4 1837 aa17.95■□□□□ 0.46
LINC00661-203ENST00000549131 IDH1O75874 414 aaKnown RBP17.94■□□□□ 0.46
LINC00661-203ENST00000549131 BAG3O95817 575 aa17.94■□□□□ 0.46
LINC00661-203ENST00000549131 MAP4K4O95819 1239 aaPredicted RBP17.94■□□□□ 0.46
LINC00661-203ENST00000549131 PPATQ06203 517 aa17.94■□□□□ 0.46
LINC00661-203ENST00000549131 TAF1CQ15572 869 aaPredicted RBP17.94■□□□□ 0.46
LINC00661-203ENST00000549131 NOL9Q5SY16 702 aaKnown RBP17.94■□□□□ 0.46
LINC00661-203ENST00000549131 ADGRA1Q86SQ6 560 aa17.94■□□□□ 0.46
LINC00661-203ENST00000549131 CLASRPQ8N2M8 674 aaKnown RBP17.94■□□□□ 0.46
LINC00661-203ENST00000549131 SH3RF3Q8TEJ3 882 aaPredicted RBP17.94■□□□□ 0.46
LINC00661-203ENST00000549131 YTHDC1Q96MU7 727 aaKnown RBP17.94■□□□□ 0.46
LINC00661-203ENST00000549131 PLCG2P16885 1265 aa17.93■□□□□ 0.46
LINC00661-203ENST00000549131 FAM43AQ8N2R8 423 aa17.93■□□□□ 0.46
LINC00661-203ENST00000549131 OSBPL5Q9H0X9 879 aaPredicted RBP17.93■□□□□ 0.46
LINC00661-203ENST00000549131 DDX60LQ5H9U9 1706 aaKnown RBP17.92■□□□□ 0.46
LINC00661-203ENST00000549131 FAM196BA6NMK8 535 aa17.92■□□□□ 0.46
LINC00661-203ENST00000549131 NPM3O75607 178 aaKnown RBP17.92■□□□□ 0.46
LINC00661-203ENST00000549131 IFIT2P09913 472 aaKnown RBP17.92■□□□□ 0.46
LINC00661-203ENST00000549131 SLURP2P0DP57 97 aa17.92■□□□□ 0.46
LINC00661-203ENST00000549131 SCYL3Q8IZE3 742 aa17.92■□□□□ 0.46
LINC00661-203ENST00000549131 PICK1Q9NRD5 415 aa17.92■□□□□ 0.46
LINC00661-203ENST00000549131 PHF20L1A8MW92 1017 aa17.91■□□□□ 0.46
LINC00661-203ENST00000549131 RAB11FIP3O75154 756 aa17.91■□□□□ 0.46
LINC00661-203ENST00000549131 PKN2Q16513 984 aaKnown RBP17.91■□□□□ 0.46
LINC00661-203ENST00000549131 ANTXR1Q9H6X2 564 aa17.91■□□□□ 0.46
LINC00661-203ENST00000549131 ZFYVE28Q9HCC9 887 aa17.91■□□□□ 0.46
LINC00661-203ENST00000549131 LOC285556D6RIA3 1793 aa17.91■□□□□ 0.46
LINC00661-203ENST00000549131 MYH8P13535 1937 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 BTBD19C9JJ37 291 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 IGSF3O75054 1194 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 CYP7A1P22680 504 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 MAPKAPK5Q8IW41 473 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 MAGEB6Q8N7X4 407 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 CD99L2Q8TCZ2 262 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 TGFBRAP1Q8WUH2 860 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 ERO1AQ96HE7 468 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 DNAJC2Q99543 621 aaKnown RBP17.9■□□□□ 0.46
LINC00661-203ENST00000549131 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.9■□□□□ 0.46
LINC00661-203ENST00000549131 KCNH4Q9UQ05 1017 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 TRIM17Q9Y577 477 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 FLT1P17948 1338 aa17.9■□□□□ 0.46
LINC00661-203ENST00000549131 MGAMO43451 1857 aa17.89■□□□□ 0.45
LINC00661-203ENST00000549131 SP3Q02447 781 aa17.89■□□□□ 0.45
LINC00661-203ENST00000549131 MAP3K12Q12852 859 aa17.89■□□□□ 0.45
LINC00661-203ENST00000549131 MIGA1Q8NAN2 632 aa17.89■□□□□ 0.45
LINC00661-203ENST00000549131 ZCCHC17Q9NP64 241 aaKnown RBP17.89■□□□□ 0.45
LINC00661-203ENST00000549131 HPS5Q9UPZ3 1129 aa17.89■□□□□ 0.45
LINC00661-203ENST00000549131 HTTP42858 3142 aa17.89■□□□□ 0.45
LINC00661-203ENST00000549131 CTNND1O60716 968 aaKnown RBP17.88■□□□□ 0.45
LINC00661-203ENST00000549131 PTPRAP18433 802 aa17.88■□□□□ 0.45
LINC00661-203ENST00000549131 PPP4CP60510 307 aa17.88■□□□□ 0.45
LINC00661-203ENST00000549131 DYNLL1P63167 89 aaKnown RBP17.88■□□□□ 0.45
LINC00661-203ENST00000549131 MAP3K10Q02779 954 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms