RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 MYO9BQ13459 2157 aa17.77■□□□□ 0.44
PTCH1-217ENST00000548420 FANCIQ9NVI1 1328 aa17.77■□□□□ 0.44
PTCH1-217ENST00000548420 CXCL11O14625 94 aa17.77■□□□□ 0.44
PTCH1-217ENST00000548420 THEGQ9P2T0 379 aa17.77■□□□□ 0.44
PTCH1-217ENST00000548420 A0A0G2JLL6 359 aaPredicted RBP17.76■□□□□ 0.43
PTCH1-217ENST00000548420 ITGA6P23229 1130 aa17.76■□□□□ 0.43
PTCH1-217ENST00000548420 MRPS5P82675 430 aaKnown RBP17.76■□□□□ 0.43
PTCH1-217ENST00000548420 GOLGA2Q08379 1002 aa17.76■□□□□ 0.43
PTCH1-217ENST00000548420 TWISTNBQ3B726 338 aaPredicted RBP17.76■□□□□ 0.43
PTCH1-217ENST00000548420 DIEXFQ68CQ4 756 aaKnown RBP17.76■□□□□ 0.43
PTCH1-217ENST00000548420 ZNF804AQ7Z570 1209 aa17.76■□□□□ 0.43
PTCH1-217ENST00000548420 PRRT2Q7Z6L0 340 aaPredicted RBP17.76■□□□□ 0.43
PTCH1-217ENST00000548420 METTL22Q9BUU2 404 aaPredicted RBP17.76■□□□□ 0.43
PTCH1-217ENST00000548420 PTPRFP10586 1907 aa17.76■□□□□ 0.43
PTCH1-217ENST00000548420 VAMP4O75379 141 aa17.75■□□□□ 0.43
PTCH1-217ENST00000548420 IGKV5-2P06315 115 aa17.75■□□□□ 0.43
PTCH1-217ENST00000548420 PRKAR2AP13861 404 aaKnown RBP17.75■□□□□ 0.43
PTCH1-217ENST00000548420 NOL9Q5SY16 702 aaKnown RBP17.75■□□□□ 0.43
PTCH1-217ENST00000548420 DCAF15Q66K64 600 aa17.75■□□□□ 0.43
PTCH1-217ENST00000548420 FAM83AQ86UY5 434 aa17.75■□□□□ 0.43
PTCH1-217ENST00000548420 PDE3AQ14432 1141 aa17.74■□□□□ 0.43
PTCH1-217ENST00000548420 MPHOSPH8Q99549 860 aa17.74■□□□□ 0.43
PTCH1-217ENST00000548420 C11orf16Q9NQ32 467 aa17.74■□□□□ 0.43
PTCH1-217ENST00000548420 CCND3P30281 292 aaPredicted RBP17.73■□□□□ 0.43
PTCH1-217ENST00000548420 ATN1P54259 1190 aaPredicted RBP17.73■□□□□ 0.43
PTCH1-217ENST00000548420 GADL1Q6ZQY3 521 aa17.73■□□□□ 0.43
PTCH1-217ENST00000548420 TDRD7Q8NHU6 1098 aaKnown RBP17.73■□□□□ 0.43
PTCH1-217ENST00000548420 BADQ92934 168 aa17.73■□□□□ 0.43
PTCH1-217ENST00000548420 SENP6Q9GZR1 1112 aaPredicted RBP17.73■□□□□ 0.43
PTCH1-217ENST00000548420 SLC45A1Q9Y2W3 748 aa17.73■□□□□ 0.43
PTCH1-217ENST00000548420 REV3LO60673 3130 aa17.73■□□□□ 0.43
PTCH1-217ENST00000548420 BMP1P13497 986 aa17.72■□□□□ 0.43
PTCH1-217ENST00000548420 EXOSC9Q06265 439 aaKnown RBP17.72■□□□□ 0.43
PTCH1-217ENST00000548420 FASTKD5Q7L8L6 764 aaKnown RBP17.72■□□□□ 0.43
PTCH1-217ENST00000548420 MIER1Q8N108 512 aa17.72■□□□□ 0.43
PTCH1-217ENST00000548420 SMCR8Q8TEV9 937 aaPredicted RBP17.72■□□□□ 0.43
PTCH1-217ENST00000548420 MYH16Q9H6N6 1097 aa17.72■□□□□ 0.43
PTCH1-217ENST00000548420 FRMPD3Q5JV73 1810 aa17.72■□□□□ 0.43
PTCH1-217ENST00000548420 RPAP1Q9BWH6 1393 aaPredicted RBP17.71■□□□□ 0.43
PTCH1-217ENST00000548420 MRE11P49959 708 aa17.71■□□□□ 0.43
PTCH1-217ENST00000548420 CACNB2Q08289 660 aaPredicted RBP17.71■□□□□ 0.43
PTCH1-217ENST00000548420 FAM110CQ1W6H9 321 aa17.71■□□□□ 0.43
PTCH1-217ENST00000548420 APOBEC3HQ6NTF7 200 aaKnown RBP17.71■□□□□ 0.43
PTCH1-217ENST00000548420 HOOK2Q96ED9 719 aa17.71■□□□□ 0.43
PTCH1-217ENST00000548420 AFG3L2Q9Y4W6 797 aa17.71■□□□□ 0.43
PTCH1-217ENST00000548420 CYP2B6P20813 491 aa17.7■□□□□ 0.42
PTCH1-217ENST00000548420 EPHB4P54760 987 aa17.7■□□□□ 0.42
PTCH1-217ENST00000548420 RTP1P59025 263 aa17.7■□□□□ 0.42
PTCH1-217ENST00000548420 FKBP1CQ5VVH2 108 aa17.7■□□□□ 0.42
PTCH1-217ENST00000548420 ZNF576Q9H609 170 aa17.7■□□□□ 0.42
PTCH1-217ENST00000548420 ZHX2Q9Y6X8 837 aa17.7■□□□□ 0.42
PTCH1-217ENST00000548420 XIRP2A4UGR9 3374 aa17.7■□□□□ 0.42
PTCH1-217ENST00000548420 CHD9Q3L8U1 2897 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 H7C1W4 665 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 SLC4A2P04920 1241 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 CSF1RP07333 972 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 CCDC85BQ15834 202 aaPredicted RBP17.69■□□□□ 0.42
PTCH1-217ENST00000548420 TMEM31Q5JXX7 168 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 AKNAD1Q5T1N1 836 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 P2RX7Q99572 595 aaKnown RBP17.69■□□□□ 0.42
PTCH1-217ENST00000548420 STK31Q9BXU1 1019 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 PHIPQ8WWQ0 1821 aa17.69■□□□□ 0.42
PTCH1-217ENST00000548420 DDX58O95786 925 aaKnown RBP17.68■□□□□ 0.42
PTCH1-217ENST00000548420 DNAJB2P25686 324 aa17.68■□□□□ 0.42
PTCH1-217ENST00000548420 ADGRE1Q14246 886 aa17.68■□□□□ 0.42
PTCH1-217ENST00000548420 CWF19L2Q2TBE0 894 aaKnown RBP17.68■□□□□ 0.42
PTCH1-217ENST00000548420 TREML2Q5T2D2 321 aa17.68■□□□□ 0.42
PTCH1-217ENST00000548420 KSR2Q6VAB6 950 aa17.68■□□□□ 0.42
PTCH1-217ENST00000548420 G2E3Q7L622 706 aa17.68■□□□□ 0.42
PTCH1-217ENST00000548420 KHSRPQ92945 711 aaKnown RBP eCLIP17.68■□□□□ 0.42
PTCH1-217ENST00000548420 PRKAG2Q9UGJ0 569 aa17.68■□□□□ 0.42
PTCH1-217ENST00000548420 MAP3K2Q9Y2U5 619 aa17.68■□□□□ 0.42
PTCH1-217ENST00000548420 RLFQ13129 1914 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 PTPRAP18433 802 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 GYG1P46976 350 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 HDLBPQ00341 1268 aaKnown RBP17.67■□□□□ 0.42
PTCH1-217ENST00000548420 SLFN5Q08AF3 891 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 UBE3BQ7Z3V4 1068 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 SH3RF1Q7Z6J0 888 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 TRMT2AQ8IZ69 625 aaKnown RBP17.67■□□□□ 0.42
PTCH1-217ENST00000548420 ZDHHC15Q96MV8 337 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 DAGLAQ9Y4D2 1042 aa17.67■□□□□ 0.42
PTCH1-217ENST00000548420 CACNA1FO60840 1977 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 PI4KAP2A4QPH2 592 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 FAM86C2PA6NEL3 165 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 PHF20L1A8MW92 1017 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 E9PSI1 815 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 CASP7P55210 303 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 PI4KAP1Q8N8J0 262 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 PLA2G12BQ9BX93 195 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.66■□□□□ 0.42
PTCH1-217ENST00000548420 ATP11BQ9Y2G3 1177 aa17.66■□□□□ 0.42
PTCH1-217ENST00000548420 TRIM43BA6NCK2 446 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 PEX10O60683 326 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 SLURP2P0DP57 97 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 ITGB8P26012 769 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 CCL14Q16627 93 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 FAM151AQ8WW52 585 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 TEKT1Q969V4 418 aa17.65■□□□□ 0.42
PTCH1-217ENST00000548420 TRIM43Q96BQ3 446 aaPredicted RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms