RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 LDHAL6AQ6ZMR3 332 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 TSC1Q92574 1164 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 MAP4K1Q92918 833 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 NEUROD6Q96NK8 337 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 DBNDD2Q9BQY9 259 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 KLF16Q9BXK1 252 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-239ENST00000545694 ALDH8A1Q9H2A2 487 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-239ENST00000545694 BOLA2Q9H3K6 86 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 CNNM1Q9NRU3 951 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 PAG1Q9NWQ8 432 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 NIP7Q9Y221 180 aaKnown RBP eCLIP7.42□□□□□ -1.22
SYNE1-239ENST00000545694 RTCBQ9Y3I0 505 aaKnown RBP7.42□□□□□ -1.22
SYNE1-239ENST00000545694 CCDC171Q6TFL3 1326 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 UBN2Q6ZU65 1347 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 MED23Q9ULK4 1368 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 PDE8BO95263 885 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 NTSR2O95665 410 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 F12P00748 615 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 IFIT1P09914 478 aaKnown RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 SSFA2P28290 1259 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 IGHMBP2P38935 993 aaKnown RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 ANKRD1Q15327 319 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 SF3B3Q15393 1217 aaKnown RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 PUM3Q15397 648 aaKnown RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 NFKBIBQ15653 356 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 ATP2B3Q16720 1220 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 MCMDC2Q4G0Z9 681 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 LRRC24Q50LG9 513 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 METTL24Q5JXM2 366 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 SUSD4Q5VX71 490 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 NPAS3Q8IXF0 933 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 SEPT12Q8IYM1 358 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 LINC00116Q8NCU8 138 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 LPIN2Q92539 896 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 JARID2Q92833 1246 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 CHMP4CQ96CF2 233 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 ZSCAN31Q96LW9 406 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 MPHOSPH8Q99549 860 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 GREM2Q9H772 168 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 ZFAND3Q9H8U3 227 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 TLR7Q9NYK1 1049 aaKnown RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 CCNL1Q9UK58 526 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-239ENST00000545694 C4BP0C0L5 1744 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 CASZ1Q86V15 1759 aa7.41□□□□□ -1.22
SYNE1-239ENST00000545694 ZIC2O95409 532 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-239ENST00000545694 NR3C2P08235 984 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 HMGB1P09429 215 aaKnown RBP7.4□□□□□ -1.22
SYNE1-239ENST00000545694 SLC5A1P13866 664 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 LORP23490 312 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-239ENST00000545694 NEK4P51957 841 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 NMIQ13287 307 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-239ENST00000545694 CUL4AQ13619 759 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 NECTIN1Q15223 517 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 C4orf48Q5BLP8 95 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 TTC39AQ5SRH9 613 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 USPL1Q5W0Q7 1092 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 CLEC17AQ6ZS10 378 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 VGLL2Q8N8G2 317 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 ZSCAN1Q8NBB4 408 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 XAGE2Q96GT9 111 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 GBP4Q96PP9 640 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 CDK15Q96Q40 435 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 DSCC1Q9BVC3 393 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.4□□□□□ -1.22
SYNE1-239ENST00000545694 QTRT2Q9H974 415 aaKnown RBP7.4□□□□□ -1.22
SYNE1-239ENST00000545694 SH2B1Q9NRF2 756 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-239ENST00000545694 RIC1Q4ADV7 1423 aa7.4□□□□□ -1.22
SYNE1-239ENST00000545694 BRWD3Q6RI45 1802 aa7.4□□□□□ -1.23
SYNE1-239ENST00000545694 UBR3Q6ZT12 1888 aa7.4□□□□□ -1.23
SYNE1-239ENST00000545694 RNF113AO15541 343 aaKnown RBP7.39□□□□□ -1.23
SYNE1-239ENST00000545694 MAP4K4O95819 1239 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-239ENST00000545694 ARID4AP29374 1257 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-239ENST00000545694 KCNJ4P48050 445 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 TIMM10P62072 90 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 RBM6P78332 1123 aaKnown RBP7.39□□□□□ -1.23
SYNE1-239ENST00000545694 RAB3GAP1Q15042 981 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 QPCTQ16769 361 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 TRAPPC3LQ5T215 181 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 C6orf118Q5T5N4 469 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 VPS53Q5VIR6 699 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 PRPF38BQ5VTL8 546 aaKnown RBP7.39□□□□□ -1.23
SYNE1-239ENST00000545694 TPTE2Q6XPS3 522 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 ITPKCQ96DU7 683 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 ZNF594Q96JF6 807 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-239ENST00000545694 SETDB2Q96T68 719 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 SLKQ9H2G2 1235 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-239ENST00000545694 LIMD1Q9UGP4 676 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 CTNNA3Q9UI47 895 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 SNX14Q9Y5W7 946 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 CYP46A1Q9Y6A2 500 aa7.39□□□□□ -1.23
SYNE1-239ENST00000545694 DOCK2Q92608 1830 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 A0A1B0GUL6 1792 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 RGPD3A6NKT7 1758 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 RGPD4Q7Z3J3 1758 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 C4AP0C0L4 1744 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 GOLGA6L22H0YM25 854 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 TAF5LO75529 589 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 FGFR2P21802 821 aa7.38□□□□□ -1.23
SYNE1-239ENST00000545694 GTF2E1P29083 439 aaPredicted RBP7.38□□□□□ -1.23
SYNE1-239ENST00000545694 GRM5P41594 1212 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms