RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SEPT12Q8IYM1 358 aa19.01■□□□□ 0.63
COL4A1-204ENST00000543140 LRRC4BQ9NT99 713 aa19.01■□□□□ 0.63
COL4A1-204ENST00000543140 PCDHA7Q9UN72 937 aa19.01■□□□□ 0.63
COL4A1-204ENST00000543140 LY75O60449 1722 aa19.01■□□□□ 0.63
COL4A1-204ENST00000543140 MYH13Q9UKX3 1938 aa19.01■□□□□ 0.63
COL4A1-204ENST00000543140 KIF23Q02241 960 aaPredicted RBP19.01■□□□□ 0.63
COL4A1-204ENST00000543140 RTEL1Q9NZ71 1219 aa19.01■□□□□ 0.63
COL4A1-204ENST00000543140 TIAM2Q8IVF5 1701 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 AP5Z1O43299 807 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 WTAPQ15007 396 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 STK38Q15208 465 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 MYSM1Q5VVJ2 828 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 CCDC73Q6ZRK6 1079 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 RBM43Q6ZSC3 357 aaKnown RBP19■□□□□ 0.63
COL4A1-204ENST00000543140 LUZP1Q86V48 1076 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 FSIP1Q8NA03 581 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 ANKRD2Q9GZV1 360 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 NFIXQ14938 502 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 SART3Q15020 963 aaKnown RBP19■□□□□ 0.63
COL4A1-204ENST00000543140 SF3A1Q15459 793 aaKnown RBP19■□□□□ 0.63
COL4A1-204ENST00000543140 KRT40Q6A162 431 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 SASS6Q6UVJ0 657 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 SYNE3Q6ZMZ3 975 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 KLHL34Q8N239 644 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 CCDC82Q8N4S0 544 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 SLC26A6Q9BXS9 759 aa19■□□□□ 0.63
COL4A1-204ENST00000543140 HSPA1LP34931 641 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 MECOMQ03112 1051 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 SNW1Q13573 536 aaKnown RBP18.99■□□□□ 0.63
COL4A1-204ENST00000543140 BRAPQ7Z569 592 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 CMTR1Q8N1G2 835 aaKnown RBP18.99■□□□□ 0.63
COL4A1-204ENST00000543140 LINC00301Q8NCQ3 95 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 FAM200AQ8TCP9 573 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 MYH2Q9UKX2 1941 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 TNRC6CQ9HCJ0 1690 aaKnown RBP18.99■□□□□ 0.63
COL4A1-204ENST00000543140 ECM29Q5VYK3 1845 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 ERICH2A1L162 156 aa18.99■□□□□ 0.63
COL4A1-204ENST00000543140 RNF41Q9H4P4 317 aaPredicted RBP18.99■□□□□ 0.63
COL4A1-204ENST00000543140 PRDX5P30044 214 aa18.98■□□□□ 0.63
COL4A1-204ENST00000543140 NSUN4Q96CB9 384 aaKnown RBP18.98■□□□□ 0.63
COL4A1-204ENST00000543140 ZKSCAN5Q9Y2L8 839 aa18.98■□□□□ 0.63
COL4A1-204ENST00000543140 A0A1B0GVL5 298 aa18.98■□□□□ 0.63
COL4A1-204ENST00000543140 PRDM1O75626 825 aa18.98■□□□□ 0.63
COL4A1-204ENST00000543140 NUP133Q8WUM0 1156 aa18.98■□□□□ 0.63
COL4A1-204ENST00000543140 UBAC1Q9BSL1 405 aa18.98■□□□□ 0.63
COL4A1-204ENST00000543140 AATFQ9NY61 560 aaKnown RBP eCLIP18.98■□□□□ 0.63
COL4A1-204ENST00000543140 ANKIB1Q9P2G1 1089 aa18.98■□□□□ 0.63
COL4A1-204ENST00000543140 FAM160A1Q05DH4 1040 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 SSRP1Q08945 709 aaKnown RBP18.97■□□□□ 0.63
COL4A1-204ENST00000543140 GNL2Q13823 731 aaKnown RBP18.97■□□□□ 0.63
COL4A1-204ENST00000543140 CNBD1Q8NA66 436 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 ERCC4Q92889 916 aaPredicted RBP18.97■□□□□ 0.63
COL4A1-204ENST00000543140 DNAJC25Q9H1X3 360 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 CBX8Q9HC52 389 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 POLR3EQ9NVU0 708 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.97■□□□□ 0.63
COL4A1-204ENST00000543140 SEMA3EO15041 775 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 KINO60870 393 aaKnown RBP18.97■□□□□ 0.63
COL4A1-204ENST00000543140 GUCY1A2P33402 732 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 EVX2Q03828 476 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 ENGASEQ8NFI3 743 aa18.97■□□□□ 0.63
COL4A1-204ENST00000543140 SPTLC2O15270 562 aa18.96■□□□□ 0.63
COL4A1-204ENST00000543140 RTN1Q16799 776 aa18.96■□□□□ 0.63
COL4A1-204ENST00000543140 ADALQ6DHV7 355 aa18.96■□□□□ 0.63
COL4A1-204ENST00000543140 ZNF830Q96NB3 372 aaPredicted RBP18.96■□□□□ 0.63
COL4A1-204ENST00000543140 A0A087WWV3 80 aa18.96■□□□□ 0.63
COL4A1-204ENST00000543140 TRIM29Q14134 588 aa18.96■□□□□ 0.63
COL4A1-204ENST00000543140 ANO1Q5XXA6 986 aa18.96■□□□□ 0.63
COL4A1-204ENST00000543140 MRPS27Q92552 414 aaKnown RBP18.96■□□□□ 0.63
COL4A1-204ENST00000543140 ESR2Q92731 530 aa18.96■□□□□ 0.63
COL4A1-204ENST00000543140 USP17L12C9JPN9 530 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 USP17L21D6R901 530 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 KCNG4Q8TDN1 519 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 ANAPC4Q9UJX5 808 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 TNKSO95271 1327 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 YEATS4O95619 227 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 MARCKSP29966 332 aaPredicted RBP18.95■□□□□ 0.62
COL4A1-204ENST00000543140 NDUFA8P51970 172 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 CTR9Q6PD62 1173 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 ZNF654Q8IZM8 581 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 GPR101Q96P66 508 aaPredicted RBP18.95■□□□□ 0.62
COL4A1-204ENST00000543140 BRIP1Q9BX63 1249 aa18.95■□□□□ 0.62
COL4A1-204ENST00000543140 BCL11BQ9C0K0 894 aaPredicted RBP18.95■□□□□ 0.62
COL4A1-204ENST00000543140 TRPC5Q9UL62 973 aaPredicted RBP18.95■□□□□ 0.62
COL4A1-204ENST00000543140 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.95■□□□□ 0.62
COL4A1-204ENST00000543140 ONECUT3O60422 494 aaPredicted RBP18.94■□□□□ 0.62
COL4A1-204ENST00000543140 FMNL1O95466 1100 aaPredicted RBP18.94■□□□□ 0.62
COL4A1-204ENST00000543140 IFNAR1P17181 557 aa18.94■□□□□ 0.62
COL4A1-204ENST00000543140 ZNF165P49910 485 aa18.94■□□□□ 0.62
COL4A1-204ENST00000543140 SLC4A8Q2Y0W8 1093 aa18.94■□□□□ 0.62
COL4A1-204ENST00000543140 FMR1NBQ8N0W7 255 aaPredicted RBP18.94■□□□□ 0.62
COL4A1-204ENST00000543140 FANCBQ8NB91 859 aa18.94■□□□□ 0.62
COL4A1-204ENST00000543140 GRAPQ13588 217 aa18.93■□□□□ 0.62
COL4A1-204ENST00000543140 TMTC2Q8N394 836 aa18.93■□□□□ 0.62
COL4A1-204ENST00000543140 GRAPLQ8TC17 118 aaPredicted RBP18.93■□□□□ 0.62
COL4A1-204ENST00000543140 NAP1L5Q96NT1 182 aaPredicted RBP18.93■□□□□ 0.62
COL4A1-204ENST00000543140 PRR5LQ6MZQ0 368 aa18.93■□□□□ 0.62
COL4A1-204ENST00000543140 ENAHQ8N8S7 591 aaPredicted RBP18.93■□□□□ 0.62
COL4A1-204ENST00000543140 FBXW7Q969H0 707 aa18.93■□□□□ 0.62
COL4A1-204ENST00000543140 KCNJ14Q9UNX9 436 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms