RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 RFXAPO00287 272 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 IRS4O14654 1257 aaPredicted RBP4.32□□□□□ -1.72
CHD4-209ENST00000542717 DIAPH1O60610 1272 aaKnown RBP4.32□□□□□ -1.72
CHD4-209ENST00000542717 CLTBP09497 229 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 EIF2S2P20042 333 aaKnown RBP4.32□□□□□ -1.72
CHD4-209ENST00000542717 INPP5BP32019 993 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 KCNJ4P48050 445 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 TLE2Q04725 743 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 TCF15Q12870 199 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 FAM110CQ1W6H9 321 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 SPDYE2Q495Y8 402 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 EPHA10Q5JZY3 1008 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 GPAT2Q6NUI2 795 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 MIGA2Q7L4E1 593 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 MCM10Q7L590 875 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 COPS6Q7L5N1 327 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 ASCL5Q7RTU5 278 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 TRMT44Q8IYL2 757 aaKnown RBP4.32□□□□□ -1.72
CHD4-209ENST00000542717 ARRDC4Q8NCT1 418 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 FERMT2Q96AC1 680 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 PBXIP1Q96AQ6 731 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 CHAMP1Q96JM3 812 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 TEPSINQ96N21 525 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 NUDT12Q9BQG2 462 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.32□□□□□ -1.721e-11■□□□□ 9
CHD4-209ENST00000542717 ZNF341Q9BYN7 854 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 CWC22Q9HCG8 908 aaKnown RBP4.32□□□□□ -1.72
CHD4-209ENST00000542717 TMEM39AQ9NV64 488 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 JAG2Q9Y219 1238 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 SIPA1L3O60292 1781 aaPredicted RBP4.32□□□□□ -1.72
CHD4-209ENST00000542717 RPAP1Q9BWH6 1393 aaPredicted RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 ECM29Q5VYK3 1845 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 H0Y858 1186 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 CXCL11O14625 94 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 MSCO60682 206 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 PQBP1O60828 265 aaKnown RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 KDM4AO75164 1064 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 ANXA1P04083 346 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 HSP90B1P14625 803 aaKnown RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 IL9P15248 144 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 CCT4P50991 539 aaKnown RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 MOGSQ13724 837 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 DCTN1Q14203 1278 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 PKN1Q16512 942 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 CCDC152Q4G0S7 254 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 KRT40Q6A162 431 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 TXNRD3Q86VQ6 643 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 CERS5Q8N5B7 392 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 SLC44A5Q8NCS7 719 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 SOCS4Q8WXH5 440 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 LPAR1Q92633 364 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 UPF3BQ9BZI7 483 aaKnown RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 MTIF3Q9H2K0 278 aaKnown RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 CERS4Q9HA82 394 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 TLR9Q9NR96 1032 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 SH2B1Q9NRF2 756 aaPredicted RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 TMOD2Q9NZR1 351 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 DDX20Q9UHI6 824 aaKnown RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 GJD2Q9UKL4 321 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 PNMA3Q9UL41 463 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 YBX2Q9Y2T7 364 aaKnown RBP4.31□□□□□ -1.72
CHD4-209ENST00000542717 MTCH2Q9Y6C9 303 aa4.31□□□□□ -1.72
CHD4-209ENST00000542717 ATRNL1Q5VV63 1379 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 ZNF536O15090 1300 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 COL4A1P02462 1669 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 FAM186AA6NE01 2351 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 POTEB3A0JP26 581 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 PRR23AA6NEV1 266 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 ATP5J2-PTCD1G3V325 749 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 ACRP10323 421 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 KCNA5P22460 613 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 RGS2P41220 211 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 ADCYAP1R1P41586 468 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 RABGGTBP53611 331 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 CACNB3P54284 484 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 PPIGQ13427 754 aaKnown RBP eCLIP4.3□□□□□ -1.727e-13■□□□□ 9.7
CHD4-209ENST00000542717 TAF7Q15545 349 aaPredicted RBP4.3□□□□□ -1.72
CHD4-209ENST00000542717 MFSD14CQ5VZR4 134 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 PTCRAQ6ISU1 281 aaPredicted RBP4.3□□□□□ -1.72
CHD4-209ENST00000542717 POTEBQ6S5H4 581 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 ADSSL1Q8N142 457 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 XAGE3Q8WTP9 111 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 RMDN1Q96DB5 314 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 CDC5LQ99459 802 aaKnown RBP4.3□□□□□ -1.72
CHD4-209ENST00000542717 CD209Q9NNX6 404 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 DACH1Q9UI36 760 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 TTF2Q9UNY4 1162 aaKnown RBP4.3□□□□□ -1.72
CHD4-209ENST00000542717 SLC45A1Q9Y2W3 748 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 ZHX2Q9Y6X8 837 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 USP34Q70CQ2 3546 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 DNAH12Q6ZR08 3092 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 XIRP2A4UGR9 3374 aa4.3□□□□□ -1.72
CHD4-209ENST00000542717 AK9Q5TCS8 1911 aa4.29□□□□□ -1.72
CHD4-209ENST00000542717 RIF1Q5UIP0 2472 aaKnown RBP4.29□□□□□ -1.72
CHD4-209ENST00000542717 A0A0G2JLL6 359 aaPredicted RBP4.29□□□□□ -1.72
CHD4-209ENST00000542717 KIAA0355O15063 1070 aa4.29□□□□□ -1.72
CHD4-209ENST00000542717 XRCC5P13010 732 aaKnown RBP4.29□□□□□ -1.72
CHD4-209ENST00000542717 SLC5A1P13866 664 aa4.29□□□□□ -1.72
CHD4-209ENST00000542717 HOXB3P14651 431 aaPredicted RBP4.29□□□□□ -1.72
CHD4-209ENST00000542717 MYOGP15173 224 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms