RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 TFCP2Q12800 502 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 NEDD9Q14511 834 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 LMBR1LQ6UX01 489 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 TAX1BP1Q86VP1 789 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 SPC24Q8NBT2 197 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 CTCFLQ8NI51 663 aaPredicted RBP12.74□□□□□ -0.37
CDH3-203ENST00000542274 TBC1D5Q92609 795 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 CCDC85AQ96PX6 553 aaPredicted RBP12.74□□□□□ -0.37
CDH3-203ENST00000542274 PNMA2Q9UL42 364 aa12.74□□□□□ -0.37
CDH3-203ENST00000542274 TTC41PQ6P2S7 1318 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 USP42Q9H9J4 1324 aaKnown RBP12.73□□□□□ -0.37
CDH3-203ENST00000542274 EP400Q96L91 3159 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 HSPA4P34932 840 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 SLC7A5Q01650 507 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 MECOMQ03112 1051 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 E2F5Q15329 346 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 TTC30AQ86WT1 665 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 CASP7P55210 303 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 USP4Q13107 963 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 ZNF594Q96JF6 807 aaPredicted RBP12.73□□□□□ -0.37
CDH3-203ENST00000542274 SNX14Q9Y5W7 946 aa12.73□□□□□ -0.37
CDH3-203ENST00000542274 SYNRGQ9UMZ2 1314 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 MARCH6O60337 910 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 BAG4O95429 457 aaKnown RBP12.72□□□□□ -0.37
CDH3-203ENST00000542274 ZRSR1Q15695 479 aaKnown RBP12.72□□□□□ -0.37
CDH3-203ENST00000542274 KIAA1524Q8TCG1 905 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 AGAP3Q96P47 875 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 RDXP35241 583 aaKnown RBP12.72□□□□□ -0.37
CDH3-203ENST00000542274 USP8P40818 1118 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 PLA2G4AP47712 749 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 ITPK1Q13572 414 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 PDIA5Q14554 519 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 CRYMQ14894 314 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 ADCK5Q3MIX3 580 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 SLFNL1Q499Z3 407 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 MCTP1Q6DN14 999 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 LRSAM1Q6UWE0 723 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 ERC1Q8IUD2 1116 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 PDRG1Q9NUG6 133 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 DBNLQ9UJU6 430 aaKnown RBP12.72□□□□□ -0.37
CDH3-203ENST00000542274 PPME1Q9Y570 386 aa12.72□□□□□ -0.37
CDH3-203ENST00000542274 MYH14Q7Z406 1995 aaKnown RBP12.72□□□□□ -0.37
CDH3-203ENST00000542274 IVLP07476 585 aa12.71□□□□□ -0.37
CDH3-203ENST00000542274 ANKRD18AQ8IVF6 992 aa12.71□□□□□ -0.37
CDH3-203ENST00000542274 ZBTB10Q96DT7 871 aa12.71□□□□□ -0.37
CDH3-203ENST00000542274 JPH2Q9BR39 696 aaPredicted RBP12.71□□□□□ -0.37
CDH3-203ENST00000542274 KIF9Q9HAQ2 790 aa12.71□□□□□ -0.37
CDH3-203ENST00000542274 FHOD1Q9Y613 1164 aa12.71□□□□□ -0.37
CDH3-203ENST00000542274 TAF6LQ9Y6J9 622 aa12.71□□□□□ -0.37
CDH3-203ENST00000542274 A0A0D9SFI3 127 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 PPFIA4O75335 1185 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 GPTP24298 496 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 GCKP35557 465 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 NMIQ13287 307 aaPredicted RBP12.71□□□□□ -0.38
CDH3-203ENST00000542274 HLFQ16534 295 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 CLEC17AQ6ZS10 378 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 SYNE4Q8N205 404 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 RABL2BQ9UNT1 228 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 CTDP1Q9Y5B0 961 aaPredicted RBP12.71□□□□□ -0.38
CDH3-203ENST00000542274 PALLDQ8WX93 1383 aa12.71□□□□□ -0.38
CDH3-203ENST00000542274 LOC102724428A0A0B4J2F2 783 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 SHTN1A0MZ66 631 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 CYP2E1P05181 493 aaPredicted RBP12.7□□□□□ -0.38
CDH3-203ENST00000542274 MYL1P05976 194 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 ACTN2P35609 894 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 RAB27AP51159 221 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 SIK1P57059 783 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 ZBED6P86452 979 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 FOXO4P98177 505 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 PRPF40BQ6NWY9 871 aaKnown RBP12.7□□□□□ -0.38
CDH3-203ENST00000542274 IQCF2Q8IXL9 164 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 CCDC112Q8NEF3 446 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 GJD4Q96KN9 370 aaPredicted RBP12.7□□□□□ -0.38
CDH3-203ENST00000542274 DBNDD2Q9BQY9 259 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 MRFAP1Q9Y605 127 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 ANKRD65E5RJM6 399 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 KIF6Q6ZMV9 814 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 SMIM5Q71RC9 77 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 AK7Q96M32 723 aa12.7□□□□□ -0.38
CDH3-203ENST00000542274 RTN2O75298 545 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 ZNF24P17028 368 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 PRPHP41219 470 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 RABL6Q3YEC7 729 aaPredicted RBP12.69□□□□□ -0.38
CDH3-203ENST00000542274 TADA2BQ86TJ2 420 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 ZNF589Q86UQ0 364 aaPredicted RBP12.69□□□□□ -0.38
CDH3-203ENST00000542274 SMCR8Q8TEV9 937 aaPredicted RBP12.69□□□□□ -0.38
CDH3-203ENST00000542274 TAF4BQ92750 862 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 GPATCH3Q96I76 525 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 COPRSQ9NQ92 184 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 MCM8Q9UJA3 840 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 THSD7AQ9UPZ6 1657 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 ZRANB2O95218 330 aaKnown RBP eCLIP12.69□□□□□ -0.38
CDH3-203ENST00000542274 FAM200BP0CF97 657 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 TSNAXIP1Q2TAA8 658 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 LRRC24Q50LG9 513 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 TNNI3KQ59H18 835 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 MYSM1Q5VVJ2 828 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 FSD1Q9BTV5 496 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 FPGT-TNNI3KV9GXZ4 949 aa12.69□□□□□ -0.38
CDH3-203ENST00000542274 LARGE1O95461 756 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms