RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.07□□□□□ -0.48
YBX3-211ENST00000541351 IFIT5Q13325 482 aaKnown RBP12.07□□□□□ -0.48
YBX3-211ENST00000541351 GRIN2CQ14957 1233 aa12.07□□□□□ -0.48
YBX3-211ENST00000541351 CCAR1Q8IX12 1150 aaKnown RBP12.07□□□□□ -0.48
YBX3-211ENST00000541351 PPM1EQ8WY54 764 aa12.07□□□□□ -0.48
YBX3-211ENST00000541351 TRIB2Q92519 343 aa12.07□□□□□ -0.48
YBX3-211ENST00000541351 ZNF576Q9H609 170 aa12.07□□□□□ -0.48
YBX3-211ENST00000541351 PHAXQ9H814 394 aaKnown RBP12.07□□□□□ -0.48
YBX3-211ENST00000541351 PRDM5Q9NQX1 630 aaPredicted RBP12.07□□□□□ -0.48
YBX3-211ENST00000541351 MAP3K2Q9Y2U5 619 aa12.07□□□□□ -0.48
YBX3-211ENST00000541351 MYBBP1AQ9BQG0 1328 aaKnown RBP12.07□□□□□ -0.48
YBX3-211ENST00000541351 DNAJB2P25686 324 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 TMPOP42166 694 aaKnown RBP12.06□□□□□ -0.48
YBX3-211ENST00000541351 RTP1P59025 263 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 UBE4AQ14139 1066 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 TAF7LQ5H9L4 462 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 C9orf50Q5SZB4 431 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 KSR2Q6VAB6 950 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 PROCA1Q8NCQ7 364 aaPredicted RBP12.06□□□□□ -0.48
YBX3-211ENST00000541351 MYH16Q9H6N6 1097 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 SPINK5Q9NQ38 1064 aaPredicted RBP12.06□□□□□ -0.48
YBX3-211ENST00000541351 GJD2Q9UKL4 321 aa12.06□□□□□ -0.48
YBX3-211ENST00000541351 BDP1A6H8Y1 2624 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 DNM1LO00429 736 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 CSF1RP07333 972 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 PTPRAP18433 802 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 CYP2B6P20813 491 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 TRIM32Q13049 653 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 HHIPL2Q6UWX4 724 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 TIFAQ96CG3 184 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 TBC1D2Q9BYX2 928 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 ATP11BQ9Y2G3 1177 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 AFG3L2Q9Y4W6 797 aa12.05□□□□□ -0.48
YBX3-211ENST00000541351 LRRFIP2Q9Y608 721 aaKnown RBP12.05□□□□□ -0.48
YBX3-211ENST00000541351 H7C1W4 665 aa12.04□□□□□ -0.48
YBX3-211ENST00000541351 RGS2P41220 211 aa12.04□□□□□ -0.48
YBX3-211ENST00000541351 ATN1P54259 1190 aaPredicted RBP12.04□□□□□ -0.48
YBX3-211ENST00000541351 CACNB2Q08289 660 aaPredicted RBP12.04□□□□□ -0.48
YBX3-211ENST00000541351 CCDC30Q5VVM6 783 aa12.04□□□□□ -0.48
YBX3-211ENST00000541351 LHX8Q68G74 356 aa12.04□□□□□ -0.48
YBX3-211ENST00000541351 CCDC174Q6PII3 467 aa12.04□□□□□ -0.48
YBX3-211ENST00000541351 BADQ92934 168 aa12.04□□□□□ -0.48
YBX3-211ENST00000541351 CNNM1Q9NRU3 951 aa12.04□□□□□ -0.48
YBX3-211ENST00000541351 MUC6Q6W4X9 2439 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 NEURL1BA8MQ27 555 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 SNAP23O00161 211 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 PLIN1O60240 522 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 GPR37L1O60883 481 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 MAPK4P31152 587 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 MRE11P49959 708 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 CAVIN4Q5BKX8 364 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 MFSD14CQ5VZR4 134 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 APOBEC3HQ6NTF7 200 aaKnown RBP12.03□□□□□ -0.48
YBX3-211ENST00000541351 LDHAL6AQ6ZMR3 332 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 ARRDC4Q8NCT1 418 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 LPAR1Q92633 364 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 CWC22Q9HCG8 908 aaKnown RBP12.03□□□□□ -0.48
YBX3-211ENST00000541351 CXXC1Q9P0U4 656 aaPredicted RBP12.03□□□□□ -0.48
YBX3-211ENST00000541351 CHMP3Q9Y3E7 222 aa12.03□□□□□ -0.48
YBX3-211ENST00000541351 CDH23Q9H251 3354 aa12.02□□□□□ -0.48
YBX3-211ENST00000541351 PI4KAP2A4QPH2 592 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 TRIM75PA6NK02 468 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 KBTBD13C9JR72 458 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 CTNND1O60716 968 aaKnown RBP12.02□□□□□ -0.49
YBX3-211ENST00000541351 IGKV5-2P06315 115 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 FOXK2Q01167 660 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 GCKRQ14397 625 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 CCDC57Q2TAC2 916 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 PI4KAP1Q8N8J0 262 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 APBA2Q99767 749 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 DOCK3Q8IZD9 2030 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 MAST2Q6P0Q8 1798 aa12.02□□□□□ -0.49
YBX3-211ENST00000541351 GLRX3O76003 335 aaKnown RBP12.01□□□□□ -0.49
YBX3-211ENST00000541351 ZEB1P37275 1124 aaPredicted RBP12.01□□□□□ -0.49
YBX3-211ENST00000541351 CALD1Q05682 793 aaKnown RBP12.01□□□□□ -0.49
YBX3-211ENST00000541351 TCP10Q12799 353 aa12.01□□□□□ -0.49
YBX3-211ENST00000541351 CHAF1AQ13111 956 aaPredicted RBP12.01□□□□□ -0.49
YBX3-211ENST00000541351 GTF3C2Q8WUA4 911 aaPredicted RBP12.01□□□□□ -0.49
YBX3-211ENST00000541351 MORF4L1Q9UBU8 362 aa12.01□□□□□ -0.49
YBX3-211ENST00000541351 TACC3Q9Y6A5 838 aa12.01□□□□□ -0.49
YBX3-211ENST00000541351 IGFBP4P22692 258 aa12□□□□□ -0.49
YBX3-211ENST00000541351 CCND3P30281 292 aaPredicted RBP12□□□□□ -0.49
YBX3-211ENST00000541351 GYG1P46976 350 aa12□□□□□ -0.49
YBX3-211ENST00000541351 IRX3P78415 501 aaPredicted RBP12□□□□□ -0.49
YBX3-211ENST00000541351 NEUROD2Q15784 382 aa12□□□□□ -0.49
YBX3-211ENST00000541351 CWF19L2Q2TBE0 894 aaKnown RBP12□□□□□ -0.49
YBX3-211ENST00000541351 POTEEQ6S8J3 1075 aa12□□□□□ -0.49
YBX3-211ENST00000541351 FAM84BQ96KN1 310 aaPredicted RBP12□□□□□ -0.49
YBX3-211ENST00000541351 STK31Q9BXU1 1019 aa12□□□□□ -0.49
YBX3-211ENST00000541351 KCNH6Q9H252 994 aa12□□□□□ -0.49
YBX3-211ENST00000541351 DDX20Q9UHI6 824 aaKnown RBP12□□□□□ -0.49
YBX3-211ENST00000541351 CACNA1AO00555 2505 aa12□□□□□ -0.49
YBX3-211ENST00000541351 SLC39A5Q6ZMH5 540 aa11.99□□□□□ -0.49
YBX3-211ENST00000541351 CCDC129Q6ZRS4 1044 aa11.99□□□□□ -0.49
YBX3-211ENST00000541351 GPRC5AQ8NFJ5 357 aa11.99□□□□□ -0.49
YBX3-211ENST00000541351 LTBP2Q14767 1821 aa11.99□□□□□ -0.49
YBX3-211ENST00000541351 AK9Q5TCS8 1911 aa11.99□□□□□ -0.49
YBX3-211ENST00000541351 UTYO14607 1347 aa11.98□□□□□ -0.49
YBX3-211ENST00000541351 BMP1P13497 986 aa11.98□□□□□ -0.49
YBX3-211ENST00000541351 RAG1P15918 1043 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms