RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-218	ENST00000540963	CHRDL2	Q6WN34	429 aa		33.39	■■■□□ 2.94
CHFR-218	ENST00000540963	PICK1	Q9NRD5	415 aa		33.39	■■■□□ 2.94
CHFR-218	ENST00000540963	BIN2	Q9UBW5	565 aa	Predicted RBP	33.39	■■■□□ 2.94
CHFR-218	ENST00000540963	PTPRF	P10586	1907 aa		33.39	■■■□□ 2.94
CHFR-218	ENST00000540963	GAK	O14976	1311 aa		33.37	■■■□□ 2.93
CHFR-218	ENST00000540963	CYP2C8	P10632	490 aa		33.37	■■■□□ 2.93
CHFR-218	ENST00000540963	ZFPM1	Q8IX07	1006 aa		33.37	■■■□□ 2.93
CHFR-218	ENST00000540963	HDAC5	Q9UQL6	1122 aa		33.37	■■■□□ 2.93
CHFR-218	ENST00000540963	ZHX2	Q9Y6X8	837 aa		33.37	■■■□□ 2.93
CHFR-218	ENST00000540963	RFX7	Q2KHR2	1363 aa		33.36	■■■□□ 2.93
CHFR-218	ENST00000540963	PTPRA	P18433	802 aa		33.36	■■■□□ 2.93
CHFR-218	ENST00000540963	IL15	P40933	162 aa	Predicted RBP	33.36	■■■□□ 2.93
CHFR-218	ENST00000540963	RGS3	P49796	1198 aa		33.36	■■■□□ 2.93
CHFR-218	ENST00000540963	SLF2	Q8IX21	1173 aa		33.36	■■■□□ 2.93
CHFR-218	ENST00000540963	AFG3L2	Q9Y4W6	797 aa		33.36	■■■□□ 2.93
CHFR-218	ENST00000540963	NR2E3	Q9Y5X4	410 aa		33.36	■■■□□ 2.93
CHFR-218	ENST00000540963	DOCK1	Q14185	1865 aa		33.35	■■■□□ 2.93
CHFR-218	ENST00000540963	PDS5A	Q29RF7	1337 aa	Known RBP	33.35	■■■□□ 2.93
CHFR-218	ENST00000540963	UBTFL1	P0CB47	393 aa	Predicted RBP	33.35	■■■□□ 2.93
CHFR-218	ENST00000540963	FAM163A	Q96GL9	167 aa	Predicted RBP	33.35	■■■□□ 2.93
CHFR-218	ENST00000540963	PHKA1	P46020	1223 aa		33.34	■■■□□ 2.93
CHFR-218	ENST00000540963	PXYLP1	Q8TE99	480 aa		33.34	■■■□□ 2.93
CHFR-218	ENST00000540963	U2AF1L4	Q8WU68	220 aa	Known RBP	33.34	■■■□□ 2.93
CHFR-218	ENST00000540963	SIL1	Q9H173	461 aa		33.34	■■■□□ 2.93
CHFR-218	ENST00000540963	RBM27	Q9P2N5	1060 aa	Known RBP	33.34	■■■□□ 2.93
CHFR-218	ENST00000540963	PHIP	Q8WWQ0	1821 aa		33.34	■■■□□ 2.93
CHFR-218	ENST00000540963	CTNND1	O60716	968 aa	Known RBP	33.33	■■■□□ 2.93
CHFR-218	ENST00000540963	IRF5	Q13568	498 aa		33.33	■■■□□ 2.93
CHFR-218	ENST00000540963	LRRFIP2	Q9Y608	721 aa	Known RBP	33.33	■■■□□ 2.93
CHFR-218	ENST00000540963	SZT2	Q5T011	3432 aa		33.33	■■■□□ 2.93
CHFR-218	ENST00000540963	RANBP2	P49792	3224 aa	Known RBP	33.33	■■■□□ 2.93
CHFR-218	ENST00000540963	SGPL1	O95470	568 aa		33.32	■■■□□ 2.92
CHFR-218	ENST00000540963	PRO3102	Q9H379	93 aa		33.32	■■■□□ 2.92
CHFR-218	ENST00000540963	GABRQ	Q9UN88	632 aa		33.32	■■■□□ 2.92
CHFR-218	ENST00000540963	ADCY3	O60266	1144 aa		33.31	■■■□□ 2.92
CHFR-218	ENST00000540963	FARP2	O94887	1054 aa	Predicted RBP	33.31	■■■□□ 2.92
CHFR-218	ENST00000540963	CCDC102B	Q68D86	513 aa		33.31	■■■□□ 2.92
CHFR-218	ENST00000540963	SLFN5	Q08AF3	891 aa		33.3	■■■□□ 2.92
CHFR-218	ENST00000540963	SH3BP5L	Q7L8J4	393 aa		33.3	■■■□□ 2.92
CHFR-218	ENST00000540963	DZIP1	Q86YF9	867 aa	Known RBP	33.3	■■■□□ 2.92
CHFR-218	ENST00000540963	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	33.3	■■■□□ 2.92
CHFR-218	ENST00000540963	UNC93B1	Q9H1C4	597 aa		33.3	■■■□□ 2.92
CHFR-218	ENST00000540963	COPRS	Q9NQ92	184 aa		33.3	■■■□□ 2.92
CHFR-218	ENST00000540963	FLT3LG	P49771	235 aa		33.29	■■■□□ 2.92
CHFR-218	ENST00000540963	SPTY2D1	Q68D10	685 aa	Predicted RBP	33.29	■■■□□ 2.92
CHFR-218	ENST00000540963	GADL1	Q6ZQY3	521 aa		33.29	■■■□□ 2.92
CHFR-218	ENST00000540963	SMCR8	Q8TEV9	937 aa	Predicted RBP	33.28	■■■□□ 2.92
CHFR-218	ENST00000540963	SMC4	Q9NTJ3	1288 aa		33.28	■■■□□ 2.92
CHFR-218	ENST00000540963		A0A1W2PPC1	479 aa		33.27	■■■□□ 2.92
CHFR-218	ENST00000540963	TNPO2	O14787	897 aa	Known RBP	33.27	■■■□□ 2.92
CHFR-218	ENST00000540963	TBC1D12	O60347	775 aa		33.27	■■■□□ 2.92
CHFR-218	ENST00000540963	NPM3	O75607	178 aa	Known RBP	33.27	■■■□□ 2.92
CHFR-218	ENST00000540963	DDTL	A6NHG4	134 aa	Predicted RBP	33.26	■■■□□ 2.91
CHFR-218	ENST00000540963	ZBTB7B	O15156	539 aa	Predicted RBP	33.26	■■■□□ 2.91
CHFR-218	ENST00000540963	RASGRF1	Q13972	1273 aa		33.26	■■■□□ 2.91
CHFR-218	ENST00000540963	AGTPBP1	Q9UPW5	1226 aa		33.26	■■■□□ 2.91
CHFR-218	ENST00000540963	DOCK3	Q8IZD9	2030 aa		33.26	■■■□□ 2.91
CHFR-218	ENST00000540963	MAP4K4	O95819	1239 aa	Predicted RBP	33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	INHA	P05111	366 aa		33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	CT47B1	P0C2W7	299 aa	Predicted RBP	33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	ADORA1	P30542	326 aa		33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	DDX4	Q9NQI0	724 aa	Known RBP	33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	PAK6	Q9NQU5	681 aa	Predicted RBP	33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	ABCF2	Q9UG63	623 aa		33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	PNMA3	Q9UL41	463 aa		33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	MROH7-TTC4	A0A0A0MT08	1334 aa		33.24	■■■□□ 2.91
CHFR-218	ENST00000540963	BTD	P43251	543 aa		33.23	■■■□□ 2.91
CHFR-218	ENST00000540963	COA7	Q96BR5	231 aa		33.23	■■■□□ 2.91
CHFR-218	ENST00000540963	TBC1D2	Q9BYX2	928 aa		33.23	■■■□□ 2.91
CHFR-218	ENST00000540963	GPR75-ASB3	A0A0A6YYF3	556 aa		33.22	■■■□□ 2.91
CHFR-218	ENST00000540963	TRIM75P	A6NK02	468 aa		33.22	■■■□□ 2.91
CHFR-218	ENST00000540963	ELN	P15502	786 aa		33.22	■■■□□ 2.91
CHFR-218	ENST00000540963	FAM110C	Q1W6H9	321 aa		33.22	■■■□□ 2.91
CHFR-218	ENST00000540963	PROCA1	Q8NCQ7	364 aa	Predicted RBP	33.22	■■■□□ 2.91
CHFR-218	ENST00000540963	PA2G4	Q9UQ80	394 aa	Known RBP	33.22	■■■□□ 2.91
CHFR-218	ENST00000540963	AKAP2	Q9Y2D5	859 aa		33.22	■■■□□ 2.91
CHFR-218	ENST00000540963	COL2A1	P02458	1487 aa	Predicted RBP	33.21	■■■□□ 2.91
CHFR-218	ENST00000540963	API5	Q9BZZ5	524 aa	Known RBP	33.21	■■■□□ 2.91
CHFR-218	ENST00000540963	CRISPLD2	Q9H0B8	497 aa		33.21	■■■□□ 2.91
CHFR-218	ENST00000540963	LOC285556	D6RIA3	1793 aa		33.2	■■■□□ 2.91
CHFR-218	ENST00000540963	EVI5	O60447	810 aa		33.2	■■■□□ 2.91
CHFR-218	ENST00000540963	TFRC	P02786	760 aa	Known RBP	33.2	■■■□□ 2.91
CHFR-218	ENST00000540963	PICALM	Q13492	652 aa		33.2	■■■□□ 2.91
CHFR-218	ENST00000540963	MVP	Q14764	893 aa	Known RBP	33.2	■■■□□ 2.91
CHFR-218	ENST00000540963	OSBPL5	Q9H0X9	879 aa	Predicted RBP	33.2	■■■□□ 2.91
CHFR-218	ENST00000540963	RHBDL3	P58872	404 aa		33.19	■■■□□ 2.9
CHFR-218	ENST00000540963	TIMM10	P62072	90 aa		33.19	■■■□□ 2.9
CHFR-218	ENST00000540963	ERICH6	Q7L0X2	663 aa		33.19	■■■□□ 2.9
CHFR-218	ENST00000540963	DEFB118	Q96PH6	123 aa		33.19	■■■□□ 2.9
CHFR-218	ENST00000540963	GCLC	P48506	637 aa	Predicted RBP	33.18	■■■□□ 2.9
CHFR-218	ENST00000540963	TRMT2A	Q8IZ69	625 aa	Known RBP	33.18	■■■□□ 2.9
CHFR-218	ENST00000540963	ANKRD13C	Q8N6S4	541 aa		33.18	■■■□□ 2.9
CHFR-218	ENST00000540963		A0A1B0GUL7	405 aa		33.17	■■■□□ 2.9
CHFR-218	ENST00000540963	MECOM	Q03112	1051 aa		33.17	■■■□□ 2.9
CHFR-218	ENST00000540963	XAGE2	Q96GT9	111 aa		33.17	■■■□□ 2.9
CHFR-218	ENST00000540963	NOB1	Q9ULX3	412 aa	Known RBP	33.17	■■■□□ 2.9
CHFR-218	ENST00000540963	ATAD5	Q96QE3	1844 aa		33.16	■■■□□ 2.9
CHFR-218	ENST00000540963	LDHC	P07864	332 aa		33.16	■■■□□ 2.9
CHFR-218	ENST00000540963	GSTO1	P78417	241 aa		33.16	■■■□□ 2.9
CHFR-218	ENST00000540963	PABPC4	Q13310	644 aa	Known RBP eCLIP	33.16	■■■□□ 2.9

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms