RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 PHF20L1A8MW92 1017 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 NFIAQ12857 509 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 FAM110CQ1W6H9 321 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 BEND3Q5T5X7 828 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 ZNF697Q5TEC3 545 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 CDC42EP5Q6NZY7 148 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 SCYL3Q8IZE3 742 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 C9orf78Q9NZ63 289 aaPredicted RBP15.2■□□□□ 0.02
YBX3-207ENST00000539204 GJD2Q9UKL4 321 aa15.2■□□□□ 0.02
YBX3-207ENST00000539204 LAMA2P24043 3122 aaKnown RBP15.2■□□□□ 0.02
YBX3-207ENST00000539204 GRM8O00222 908 aa15.19■□□□□ 0.02
YBX3-207ENST00000539204 COL9A1P20849 921 aa15.19■□□□□ 0.02
YBX3-207ENST00000539204 TRIM32Q13049 653 aa15.19■□□□□ 0.02
YBX3-207ENST00000539204 CDX2Q99626 313 aaPredicted RBP15.19■□□□□ 0.02
YBX3-207ENST00000539204 PNMA3Q9UL41 463 aa15.19■□□□□ 0.02
YBX3-207ENST00000539204 A0A1B0GUL6 1792 aa15.19■□□□□ 0.02
YBX3-207ENST00000539204 EYSQ5T1H1 3165 aa15.18■□□□□ 0.02
YBX3-207ENST00000539204 DOCK3Q8IZD9 2030 aa15.18■□□□□ 0.02
YBX3-207ENST00000539204 MAFAQ8NHW3 353 aaPredicted RBP15.18■□□□□ 0.02
YBX3-207ENST00000539204 LBHD1Q9BQE6 289 aaPredicted RBP15.18■□□□□ 0.02
YBX3-207ENST00000539204 USP40Q9NVE5 1235 aa15.18■□□□□ 0.02
YBX3-207ENST00000539204 AGTPBP1Q9UPW5 1226 aa15.18■□□□□ 0.02
YBX3-207ENST00000539204 LRRFIP2Q9Y608 721 aaKnown RBP15.18■□□□□ 0.02
YBX3-207ENST00000539204 PFASO15067 1338 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 AK9Q5TCS8 1911 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 TRIM75PA6NK02 468 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 F6X3S4 739 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 CTNND1O60716 968 aaKnown RBP15.17■□□□□ 0.02
YBX3-207ENST00000539204 PDE8BO95263 885 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 ZEB1P37275 1124 aaPredicted RBP15.17■□□□□ 0.02
YBX3-207ENST00000539204 GCLCP48506 637 aaPredicted RBP15.17■□□□□ 0.02
YBX3-207ENST00000539204 METTL24Q5JXM2 366 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 ZFPM1Q8IX07 1006 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 WDR66Q8TBY9 1149 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 FAM198AQ9UFP1 575 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 DAGLAQ9Y4D2 1042 aa15.17■□□□□ 0.02
YBX3-207ENST00000539204 COL6A1P12109 1028 aa15.16■□□□□ 0.02
YBX3-207ENST00000539204 LRRC26Q2I0M4 334 aa15.16■□□□□ 0.02
YBX3-207ENST00000539204 SEMA6BQ9H3T3 888 aa15.16■□□□□ 0.02
YBX3-207ENST00000539204 PRUNE2Q8WUY3 3088 aa15.15■□□□□ 0.02
YBX3-207ENST00000539204 MAP3K10Q02779 954 aa15.15■□□□□ 0.02
YBX3-207ENST00000539204 DIXDC1Q155Q3 683 aa15.15■□□□□ 0.02
YBX3-207ENST00000539204 TREML2Q5T2D2 321 aa15.15■□□□□ 0.02
YBX3-207ENST00000539204 TTC28Q96AY4 2481 aa15.15■□□□□ 0.02
YBX3-207ENST00000539204 IFIT1P09914 478 aaKnown RBP15.14■□□□□ 0.01
YBX3-207ENST00000539204 PRKAR2AP13861 404 aaKnown RBP15.14■□□□□ 0.01
YBX3-207ENST00000539204 CYP2B6P20813 491 aa15.14■□□□□ 0.01
YBX3-207ENST00000539204 PABPC4Q13310 644 aaKnown RBP eCLIP15.14■□□□□ 0.01
YBX3-207ENST00000539204 LRRC24Q50LG9 513 aa15.14■□□□□ 0.01
YBX3-207ENST00000539204 MAP3K21Q5TCX8 1036 aa15.14■□□□□ 0.01
YBX3-207ENST00000539204 ZSCAN29Q8IWY8 852 aaPredicted RBP15.14■□□□□ 0.01
YBX3-207ENST00000539204 TRIB2Q92519 343 aa15.14■□□□□ 0.01
YBX3-207ENST00000539204 MUC3AQ02505 3323 aa15.14■□□□□ 0.01
YBX3-207ENST00000539204 ENTPD3O75355 529 aa15.13■□□□□ 0.01
YBX3-207ENST00000539204 RGS3P49796 1198 aa15.13■□□□□ 0.01
YBX3-207ENST00000539204 PROCA1Q8NCQ7 364 aaPredicted RBP15.13■□□□□ 0.01
YBX3-207ENST00000539204 PRKAG2Q9UGJ0 569 aa15.13■□□□□ 0.01
YBX3-207ENST00000539204 DDX60LQ5H9U9 1706 aaKnown RBP15.12■□□□□ 0.01
YBX3-207ENST00000539204 VAMP4O75379 141 aa15.12■□□□□ 0.01
YBX3-207ENST00000539204 ALDH1L1O75891 902 aa15.12■□□□□ 0.01
YBX3-207ENST00000539204 LDHBP07195 334 aaKnown RBP15.12■□□□□ 0.01
YBX3-207ENST00000539204 XRCC5P13010 732 aaKnown RBP15.12■□□□□ 0.01
YBX3-207ENST00000539204 TRMT44Q8IYL2 757 aaKnown RBP15.12■□□□□ 0.01
YBX3-207ENST00000539204 VGLL2Q8N8G2 317 aa15.12■□□□□ 0.01
YBX3-207ENST00000539204 SUCLG2Q96I99 432 aa15.12■□□□□ 0.01
YBX3-207ENST00000539204 NUDT12Q9BQG2 462 aa15.12■□□□□ 0.01
YBX3-207ENST00000539204 IDI2Q9BXS1 227 aa15.12■□□□□ 0.01
YBX3-207ENST00000539204 KIF16BQ96L93 1317 aa15.12■□□□□ 0.01
YBX3-207ENST00000539204 TNFRSF10AO00220 468 aa15.11■□□□□ 0.01
YBX3-207ENST00000539204 CACNB2Q08289 660 aaPredicted RBP15.11■□□□□ 0.01
YBX3-207ENST00000539204 SPP2Q13103 211 aa15.11■□□□□ 0.01
YBX3-207ENST00000539204 PUM3Q15397 648 aaKnown RBP15.11■□□□□ 0.01
YBX3-207ENST00000539204 LHX8Q68G74 356 aa15.11■□□□□ 0.01
YBX3-207ENST00000539204 CCDC84Q86UT8 332 aaPredicted RBP15.11■□□□□ 0.01
YBX3-207ENST00000539204 KAZALD1Q96I82 304 aa15.11■□□□□ 0.01
YBX3-207ENST00000539204 SENP6Q9GZR1 1112 aaPredicted RBP15.11■□□□□ 0.01
YBX3-207ENST00000539204 SPINK5Q9NQ38 1064 aaPredicted RBP15.11■□□□□ 0.01
YBX3-207ENST00000539204 ATRNL1Q5VV63 1379 aa15.11■□□□□ 0.01
YBX3-207ENST00000539204 COL2A1P02458 1487 aaPredicted RBP15.1■□□□□ 0.01
YBX3-207ENST00000539204 PRDX5P30044 214 aa15.1■□□□□ 0.01
YBX3-207ENST00000539204 SH3BP5LQ7L8J4 393 aa15.1■□□□□ 0.01
YBX3-207ENST00000539204 WWC1Q8IX03 1113 aa15.1■□□□□ 0.01
YBX3-207ENST00000539204 MYLIPQ8WY64 445 aa15.1■□□□□ 0.01
YBX3-207ENST00000539204 SRCIN1Q9C0H9 1055 aa15.1■□□□□ 0.01
YBX3-207ENST00000539204 ASCC2Q9H1I8 757 aaPredicted RBP15.1■□□□□ 0.01
YBX3-207ENST00000539204 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.1■□□□□ 0.01
YBX3-207ENST00000539204 CDH23Q9H251 3354 aa15.1■□□□□ 0.01
YBX3-207ENST00000539204 DDTLA6NHG4 134 aaPredicted RBP15.09■□□□□ 0.01
YBX3-207ENST00000539204 FOSL2P15408 326 aa15.09■□□□□ 0.01
YBX3-207ENST00000539204 FGFR2P21802 821 aa15.09■□□□□ 0.01
YBX3-207ENST00000539204 CCDC27Q2M243 656 aa15.09■□□□□ 0.01
YBX3-207ENST00000539204 SLC4A10Q6U841 1118 aa15.09■□□□□ 0.01
YBX3-207ENST00000539204 ZNF280CQ8ND82 737 aa15.09■□□□□ 0.01
YBX3-207ENST00000539204 BICC1Q9H694 974 aaKnown RBP15.09■□□□□ 0.01
YBX3-207ENST00000539204 MORF4L1Q9UBU8 362 aa15.09■□□□□ 0.01
YBX3-207ENST00000539204 DNAH12Q6ZR08 3092 aa15.08■□□□□ 0.01
YBX3-207ENST00000539204 NBPF7P0C2Y1 421 aaPredicted RBP15.08■□□□□ 0
YBX3-207ENST00000539204 SLURP2P0DP57 97 aa15.08■□□□□ 0
YBX3-207ENST00000539204 SLC5A1P13866 664 aa15.08■□□□□ 0
YBX3-207ENST00000539204 ZKSCAN1P17029 563 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms