RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	SUGP1	Q8IWZ8	645 aa	Known RBP	10.3	□□□□□ -0.76
SNHG1-209	ENST00000538654	ANKRD24	Q8TF21	1146 aa		10.3	□□□□□ -0.76
SNHG1-209	ENST00000538654	BICC1	Q9H694	974 aa	Known RBP	10.3	□□□□□ -0.76
SNHG1-209	ENST00000538654	C19orf44	Q9H6X5	657 aa		10.3	□□□□□ -0.76
SNHG1-209	ENST00000538654	HOOK1	Q9UJC3	728 aa	Known RBP	10.3	□□□□□ -0.76
SNHG1-209	ENST00000538654	CDC23	Q9UJX2	597 aa		10.3	□□□□□ -0.76
SNHG1-209	ENST00000538654	L1RE1	Q9UN81	338 aa		10.3	□□□□□ -0.76
SNHG1-209	ENST00000538654	KIF5C	O60282	957 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	CP	P00450	1065 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	NLGN1	Q8N2Q7	840 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	PDILT	Q8N807	584 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	SUCLG2	Q96I99	432 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	NAA15	Q9BXJ9	866 aa	Known RBP	10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	HOXC9	P31274	260 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	E2F4	Q16254	413 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	STOX1	Q6ZVD7	989 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	PACS2	Q86VP3	889 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	HELLS	Q9NRZ9	838 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	DACH1	Q9UI36	760 aa		10.29	□□□□□ -0.76
SNHG1-209	ENST00000538654	ROBO2	Q9HCK4	1378 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	CCDC189	A1A4V9	331 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	WDHD1	O75717	1129 aa	Predicted RBP	10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	TOGARAM2	Q6ZUX3	1019 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	ELOA2	Q8IYF1	753 aa	Predicted RBP	10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	TC2N	Q8N9U0	490 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	ANKZF1	Q9H8Y5	726 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	NCOA5	Q9HCD5	579 aa	Known RBP	10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	TMEM232	C9JQI7	657 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	PPP6R2	O75170	966 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	PIP4K2B	P78356	416 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	SLC39A14	Q15043	492 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	CTCFL	Q8NI51	663 aa	Predicted RBP	10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	PANX2	Q96RD6	677 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	SEC62	Q99442	399 aa	Known RBP	10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	HAUS7	Q99871	368 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	FANCL	Q9NW38	375 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	SH3BP1	Q9Y3L3	701 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	ANKAR	Q7Z5J8	1434 aa		10.28	□□□□□ -0.76
SNHG1-209	ENST00000538654	FAM237A	A0A1B0GTK4	181 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	FDPS	P14324	419 aa	Known RBP	10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	APLP1	P51693	650 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	EIF5	P55010	431 aa	Known RBP	10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	TEF	Q10587	303 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	CWF19L2	Q2TBE0	894 aa	Known RBP	10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	DNAJC21	Q5F1R6	531 aa	Known RBP	10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	CCDC91	Q7Z6B0	441 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	ARHGEF25	Q86VW2	580 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	DHX38	Q92620	1227 aa	Known RBP	10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	SPACA7	Q96KW9	195 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	VIPAS39	Q9H9C1	493 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	HPSE	Q9Y251	543 aa		10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	10.27	□□□□□ -0.76
SNHG1-209	ENST00000538654	PIK3C2A	O00443	1686 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654		A0A087WUV0	522 aa	Predicted RBP	10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	BTBD11	A6QL63	1104 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654		E7EWF7	191 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	POLR3D	P05423	398 aa	Predicted RBP	10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	MCM3	P25205	808 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	CASP8	Q14790	479 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	WHAMMP3	Q1A5X7	153 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	SWT1	Q5T5J6	900 aa	Known RBP	10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	CCDC129	Q6ZRS4	1044 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	TSHZ1	Q6ZSZ6	1077 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	CCDC102A	Q96A19	550 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	KAZALD1	Q96I82	304 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	PALLD	Q8WX93	1383 aa		10.27	□□□□□ -0.77
SNHG1-209	ENST00000538654	CTAGE9	A4FU28	777 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	TNNI3K	Q59H18	835 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	CCDC102B	Q68D86	513 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	LRRC31	Q6UY01	552 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	MMS22L	Q6ZRQ5	1243 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	KBTBD3	Q8NAB2	608 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	CNNM3	Q8NE01	707 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	GLMN	Q92990	594 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	ABCB6	Q9NP58	842 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	COPRS	Q9NQ92	184 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	AKAP2	Q9Y2D5	859 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	FPGT-TNNI3K	V9GXZ4	949 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	LMO7	Q8WWI1	1683 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	ANXA1	P04083	346 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	GOLGA8F	Q08AF8	430 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	GOLGA8DP	Q0D2H9	430 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	KARS	Q15046	597 aa	Known RBP	10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	ISM2	Q6H9L7	571 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	EDC3	Q96F86	508 aa	Known RBP	10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	CEP89	Q96ST8	783 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	PIF1	Q9H611	641 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	DBNL	Q9UJU6	430 aa	Known RBP	10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	USP54	Q70EL1	1684 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	CTAGE15	A4D2H0	777 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	AKR1B15	C9JRZ8	316 aa	Predicted RBP	10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	CTAGE8	P0CG41	777 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	MMP14	P50281	582 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	MAP9	Q49MG5	647 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	CTAGE6	Q86UF2	777 aa		10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.26	□□□□□ -0.77
SNHG1-209	ENST00000538654	CTAGE4	Q8IX94	777 aa		10.26	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms