RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 GEN1Q17RS7 908 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 TSNAXIP1Q2TAA8 658 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 C8orf34Q49A92 452 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 A6NNZ2 444 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 HSPA1LP34931 641 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 TUBB8Q3ZCM7 444 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 IRAK4Q9NWZ3 460 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 TRAF5O00463 557 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 PLCD1P51178 756 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 CCDC92Q53HC0 331 aaPredicted RBP11.11□□□□□ -0.63
COL4A6-208ENST00000538570 PPP1R21Q6ZMI0 780 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 IGSF22Q8N9C0 903 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 EFCC1Q9HA90 598 aa11.11□□□□□ -0.63
COL4A6-208ENST00000538570 PA2G4Q9UQ80 394 aaKnown RBP11.11□□□□□ -0.63
COL4A6-208ENST00000538570 VWA3AA6NCI4 1184 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 STX10O60499 249 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 UTP14CQ5TAP6 766 aaKnown RBP11.1□□□□□ -0.63
COL4A6-208ENST00000538570 GKAP1Q5VSY0 366 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-208ENST00000538570 RASA3Q14644 834 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 SLMAPQ14BN4 828 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 MICAL1Q8TDZ2 1067 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 RABEP2Q9H5N1 569 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 CASQ2O14958 399 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-208ENST00000538570 CEBPAP49715 358 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-208ENST00000538570 KIFC2Q96AC6 838 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 PFDN4Q9NQP4 134 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 A0A1B0GVL5 298 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 NYXQ9GZU5 481 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 TBC1D8BQ0IIM8 1120 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 ASIC2Q16515 512 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 CCDC117Q8IWD4 279 aaPredicted RBP11.1□□□□□ -0.63
COL4A6-208ENST00000538570 IFT20Q8IY31 132 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 ZCRB1Q8TBF4 217 aaKnown RBP11.1□□□□□ -0.63
COL4A6-208ENST00000538570 FNBP1Q96RU3 617 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 RBSNQ9H1K0 784 aa11.1□□□□□ -0.63
COL4A6-208ENST00000538570 GOLGA6CA6NDK9 693 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 PARP1P09874 1014 aaKnown RBP11.09□□□□□ -0.63
COL4A6-208ENST00000538570 GOLGA6DP0CG33 693 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 CNNM4Q6P4Q7 775 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 UBL4BQ8N7F7 174 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 MIGA1Q8NAN2 632 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 GOLGA6AQ9NYA3 693 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 TAF12Q16514 161 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 AKAP4Q5JQC9 854 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 NIP7Q9Y221 180 aaKnown RBP eCLIP11.09□□□□□ -0.63
COL4A6-208ENST00000538570 ZNF174Q15697 407 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 TMCO4Q5TGY1 634 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 LRRC43Q8N309 656 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 EPSTI1Q96J88 318 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 RXRAP19793 462 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 CROCCP2Q86T23 111 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 C8orf58Q8NAV2 365 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 ZRANB1Q9UGI0 708 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 CALUO43852 315 aaPredicted RBP11.09□□□□□ -0.63
COL4A6-208ENST00000538570 ITIH3Q06033 890 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 PDE4DQ08499 809 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 BIRC3Q13489 604 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 LIN9Q5TKA1 542 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 TAOK1Q7L7X3 1001 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 AFAP1L2Q8N4X5 818 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 ASXL1Q8IXJ9 1541 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 BACH1O14867 736 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 CCDC38Q502W7 563 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 CEP85Q6P2H3 762 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 NUCKS1Q9H1E3 243 aaKnown RBP11.09□□□□□ -0.63
COL4A6-208ENST00000538570 VPS16Q9H269 839 aa11.09□□□□□ -0.63
COL4A6-208ENST00000538570 KRT9P35527 623 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 BCL2L12Q9HB09 334 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 MIER3Q7Z3K6 550 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 SDCCAG8Q86SQ7 713 aaPredicted RBP11.08□□□□□ -0.64
COL4A6-208ENST00000538570 NOX5Q96PH1 765 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 DCTPP1Q9H773 170 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 HELLSQ9NRZ9 838 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 THOC2Q8NI27 1593 aaKnown RBP11.08□□□□□ -0.64
COL4A6-208ENST00000538570 TFCP2Q12800 502 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 NUP58Q9BVL2 599 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 TACC3Q9Y6A5 838 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 CHMLP26374 656 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 ZNF131P52739 623 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 LETM2Q2VYF4 491 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 RILPL1Q5EBL4 403 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 CCDC62Q6P9F0 684 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 PNMA8AQ86V59 439 aaPredicted RBP11.08□□□□□ -0.64
COL4A6-208ENST00000538570 C17orf53Q8N3J3 647 aaPredicted RBP11.08□□□□□ -0.64
COL4A6-208ENST00000538570 RUFY4Q6ZNE9 571 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 LINS1Q8NG48 757 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 GABPB2Q8TAK5 448 aaPredicted RBP11.08□□□□□ -0.64
COL4A6-208ENST00000538570 MCUR1Q96AQ8 359 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 NUF2Q9BZD4 464 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 VEZTQ9HBM0 779 aa11.08□□□□□ -0.64
COL4A6-208ENST00000538570 STK10O94804 968 aaKnown RBP11.07□□□□□ -0.64
COL4A6-208ENST00000538570 SLC8A3P57103 927 aa11.07□□□□□ -0.64
COL4A6-208ENST00000538570 SLC39A6Q13433 755 aa11.07□□□□□ -0.64
COL4A6-208ENST00000538570 CHRNA2Q15822 529 aa11.07□□□□□ -0.64
COL4A6-208ENST00000538570 ARHGAP24Q8N264 748 aa11.07□□□□□ -0.64
COL4A6-208ENST00000538570 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.07□□□□□ -0.64
COL4A6-208ENST00000538570 ARHGEF2Q92974 986 aaKnown RBP11.07□□□□□ -0.64
COL4A6-208ENST00000538570 PLCH2O75038 1416 aa11.07□□□□□ -0.64
COL4A6-208ENST00000538570 MRRFQ96E11 262 aaKnown RBP11.07□□□□□ -0.64
COL4A6-208ENST00000538570 ZKSCAN3Q9BRR0 538 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms