RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 OPLAHO14841 1288 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 EIF3HO15372 352 aaKnown RBP eCLIP12.14□□□□□ -0.47
RTN3-208ENST00000537981 ZKSCAN1P17029 563 aaPredicted RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 NLRP12P59046 1061 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 MRPS25P82663 173 aaKnown RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 PDE4BQ07343 736 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 NMIQ13287 307 aaPredicted RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 ACCSLQ4AC99 568 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 ACBD3Q9H3P7 528 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 NCOA5Q9HCD5 579 aaKnown RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 GJB4Q9NTQ9 266 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 CLIC4Q9Y696 253 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 ANKRD33BA6NCL7 494 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 CHL1O00533 1208 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 PFKFB2O60825 505 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 CTDNEP1O95476 244 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 CCT4P50991 539 aaKnown RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 TBX2Q13207 712 aaPredicted RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 NAA25Q14CX7 972 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 ZNF589Q86UQ0 364 aaPredicted RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 FCHSD1Q86WN1 690 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 FAM76AQ8TAV0 307 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 BPIFA3Q9BQP9 254 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 TEX13AQ9BXU3 409 aaPredicted RBP12.14□□□□□ -0.47
RTN3-208ENST00000537981 CAPS2Q9BXY5 557 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 FAM107BQ9H098 131 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 MROH7-TTC4A0A0A0MT08 1334 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 AOX1Q06278 1338 aa12.14□□□□□ -0.47
RTN3-208ENST00000537981 GOLGA6CA6NDK9 693 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 FSBPO95073 299 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 SLC3A2P08195 630 aaKnown RBP12.13□□□□□ -0.47
RTN3-208ENST00000537981 GOLGA6DP0CG33 693 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 CSB-PGBD3P0DP91 1061 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 GCKP35557 465 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 MRPL12P52815 198 aaKnown RBP12.13□□□□□ -0.47
RTN3-208ENST00000537981 IRX1P78414 480 aaPredicted RBP12.13□□□□□ -0.47
RTN3-208ENST00000537981 RRP36Q96EU6 259 aaKnown RBP12.13□□□□□ -0.47
RTN3-208ENST00000537981 USP44Q9H0E7 712 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 ETAA1Q9NY74 926 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 GOLGA6AQ9NYA3 693 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 HDAC6Q9UBN7 1215 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 UPP2O95045 317 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 CRYMQ14894 314 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 AMOTL1Q8IY63 956 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 OTUD6BQ8N6M0 293 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 CEP112Q8N8E3 955 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 ACRBPQ8NEB7 543 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 CPLX3Q8WVH0 158 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 NBPF3Q9H094 633 aa12.13□□□□□ -0.47
RTN3-208ENST00000537981 PPP1R1BQ9UD71 204 aaPredicted RBP12.13□□□□□ -0.47
RTN3-208ENST00000537981 SRGAP2O75044 1071 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 RASSF9O75901 435 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 ATP1A2P50993 1020 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 CCT2P78371 535 aaKnown RBP12.12□□□□□ -0.47
RTN3-208ENST00000537981 PNOCQ13519 176 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 STIM1Q13586 685 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 CEP85LQ5SZL2 805 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 TLDC1Q6P9B6 456 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 APBB1IPQ7Z5R6 666 aaPredicted RBP12.12□□□□□ -0.47
RTN3-208ENST00000537981 CCDC13Q8IYE1 715 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 SH2D3CQ8N5H7 860 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 MAP4K1Q92918 833 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 SCLT1Q96NL6 688 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 SLC40A1Q9NP59 571 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 PLSCR2Q9NRY7 297 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 RPS6KL1Q9Y6S9 549 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 NCKAP5LQ9HCH0 1330 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 KIF20BQ96Q89 1820 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 ENC1O14682 589 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 FOXO3O43524 673 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 MYO1BO43795 1136 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 POLR3DP05423 398 aaPredicted RBP12.12□□□□□ -0.47
RTN3-208ENST00000537981 MYBL1P10243 752 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 ADCY2Q08462 1091 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 Q6ZUG5 572 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 RTEL1Q9NZ71 1219 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 CABP1Q9NZU7 370 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 TRIM10Q9UDY6 481 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 TFR2Q9UP52 801 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 ADGRG1Q9Y653 693 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 EFCAB6Q5THR3 1501 aa12.12□□□□□ -0.47
RTN3-208ENST00000537981 CTAGE15A4D2H0 777 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 NDUFAB1O14561 156 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 MEFVO15553 781 aaPredicted RBP12.11□□□□□ -0.47
RTN3-208ENST00000537981 STX10O60499 249 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 CTAGE8P0CG41 777 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 BMP6P22004 513 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 RNF187Q5TA31 235 aaPredicted RBP12.11□□□□□ -0.47
RTN3-208ENST00000537981 CTAGE6Q86UF2 777 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 FMNL3Q8IVF7 1028 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 CTAGE4Q8IX94 777 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 TRMT44Q8IYL2 757 aaKnown RBP12.11□□□□□ -0.47
RTN3-208ENST00000537981 CCDC26Q8TAB7 109 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 COG1Q8WTW3 980 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 ARL8AQ96BM9 186 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 EVI5LQ96CN4 794 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 RBM28Q9NW13 759 aaKnown RBP12.11□□□□□ -0.47
RTN3-208ENST00000537981 ATP7BP35670 1465 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 SHTN1A0MZ66 631 aa12.11□□□□□ -0.47
RTN3-208ENST00000537981 KCNB1Q14721 858 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms