RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CCDC65Q8IXS2 484 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 UBLCP1Q8WVY7 318 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-209ENST00000537178 MEIS3Q99687 375 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 PFDN4Q9NQP4 134 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 MYL5Q02045 173 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 TUBB2AQ13885 445 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 SETDB2Q96T68 719 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 TUBB2BQ9BVA1 445 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 HECW2Q9P2P5 1572 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 MAGEB6P1A0A0J9YX57 407 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 VIMP08670 466 aaKnown RBP11.93□□□□□ -0.5
CLIP1-209ENST00000537178 HSPA1LP34931 641 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 FYB2Q5VWT5 728 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 KRT28Q7Z3Y7 464 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 SWAP70Q9UH65 585 aa11.93□□□□□ -0.5
CLIP1-209ENST00000537178 PPP2R3AQ06190 1150 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 RAPGEF1Q13905 1077 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 GEN1Q17RS7 908 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 XAGE3Q8WTP9 111 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 KIFAP3Q92845 792 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 FEZ2Q9UHY8 353 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-209ENST00000537178 IQSEC3Q9UPP2 1182 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-209ENST00000537178 TTC41PQ6P2S7 1318 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 YEATS2Q9ULM3 1422 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 ANXA1P04083 346 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 SLC8A3P57103 927 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 PAG1Q9NWQ8 432 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 TACC3Q9Y6A5 838 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 ABCC3O15438 1527 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 AKR1B15C9JRZ8 316 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-209ENST00000537178 CASQ2O14958 399 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-209ENST00000537178 ATP11AP98196 1134 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 NAA25Q14CX7 972 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 LMNTD2Q8IXW0 634 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 JARID2Q92833 1246 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-209ENST00000537178 KIF2CQ99661 725 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 CCDC94Q9BW85 323 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-209ENST00000537178 FRMD4BQ9Y2L6 1034 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 SPOPO43791 374 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 PICALMQ13492 652 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 TRIM14Q14142 442 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 WDR44Q5JSH3 913 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 RASSF4Q9H2L5 321 aa11.92□□□□□ -0.5
CLIP1-209ENST00000537178 BACH1O14867 736 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 CRCPO75575 148 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 KSR2Q6VAB6 950 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 COPS6Q7L5N1 327 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 BAG1Q99933 345 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 OGFRQ9NZT2 677 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 NEXMIFQ5QGS0 1516 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 PRIM1P49642 420 aaKnown RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 SDCCAG8Q86SQ7 713 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 INTS4Q96HW7 963 aaKnown RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 SETD1AO15047 1707 aaKnown RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 ZNF365Q70YC5 407 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 DHX32Q7L7V1 743 aaKnown RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 KIFC2Q96AC6 838 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 F8W031 263 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 TRAF5O00463 557 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 GIPC1O14908 333 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 RNF113AO15541 343 aaKnown RBP11.91□□□□□ -0.5
CLIP1-209ENST00000537178 MCM7P33993 719 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 EVCP57679 992 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 AFAP1L2Q8N4X5 818 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 FNBP1Q96RU3 617 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 MCM9Q9NXL9 1143 aa11.91□□□□□ -0.5
CLIP1-209ENST00000537178 PTPDC1A2A3K4 754 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 E7EVH7 732 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 CLGNO14967 610 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 EPB41P11171 864 aaKnown RBP11.9□□□□□ -0.5
CLIP1-209ENST00000537178 PLCD1P51178 756 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 NMIQ13287 307 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-209ENST00000537178 BIRC3Q13489 604 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 SV2BQ7L1I2 683 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 ERO1AQ96HE7 468 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 NUF2Q9BZD4 464 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 ZC3H12CQ9C0D7 883 aaKnown RBP11.9□□□□□ -0.5
CLIP1-209ENST00000537178 CHPF2Q9P2E5 772 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 ERBB4Q15303 1308 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 DLG5Q8TDM6 1919 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 MYO5BQ9ULV0 1848 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 PCK1P35558 622 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 TERF1P54274 439 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 TBC1D8BQ0IIM8 1120 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 DCAF17Q5H9S7 520 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-209ENST00000537178 C10orf67Q8IYJ2 551 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 HAUS7Q99871 368 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 FAM83GA6ND36 823 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 NDUFAB1O14561 156 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 UAP1Q16222 522 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-209ENST00000537178 ADGRF5Q8IZF2 1346 aa11.9□□□□□ -0.5
CLIP1-209ENST00000537178 TNFAIP3P21580 790 aa11.9□□□□□ -0.51
CLIP1-209ENST00000537178 RFC1P35251 1148 aaPredicted RBP11.9□□□□□ -0.51
CLIP1-209ENST00000537178 RASA3Q14644 834 aa11.9□□□□□ -0.51
CLIP1-209ENST00000537178 LINS1Q8NG48 757 aa11.9□□□□□ -0.51
CLIP1-209ENST00000537178 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.9□□□□□ -0.51
CLIP1-209ENST00000537178 TBC1D31Q96DN5 1066 aa11.9□□□□□ -0.51
CLIP1-209ENST00000537178 AGTPBP1Q9UPW5 1226 aa11.9□□□□□ -0.51
CLIP1-209ENST00000537178 ELP1O95163 1332 aa11.9□□□□□ -0.51
CLIP1-209ENST00000537178 RAD50Q92878 1312 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms