RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 SHDQ96IW2 340 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 PICK1Q9NRD5 415 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 PRKAG3Q9UGI9 489 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 POLR3KQ9Y2Y1 108 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-208ENST00000536710 CSADQ9Y600 493 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 PRAMEF27A3QJZ7 478 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 SMAD7O15105 426 aaKnown RBP8.12□□□□□ -1.11
PRKDC-208ENST00000536710 SLFN14P0C7P3 912 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 BMS1Q14692 1282 aaKnown RBP8.12□□□□□ -1.11
PRKDC-208ENST00000536710 DUOXA2Q1HG44 320 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 DTWD1Q8N5C7 304 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 UBASH3BQ8TF42 649 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 HNRNPLLQ8WVV9 542 aaKnown RBP8.12□□□□□ -1.11
PRKDC-208ENST00000536710 CACNA2D2Q9NY47 1150 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 KCNK4Q9NYG8 393 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 ZNRF3Q9ULT6 936 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 SNCAIPQ9Y6H5 919 aa8.12□□□□□ -1.11
PRKDC-208ENST00000536710 TNNI3KQ59H18 835 aa8.11□□□□□ -1.11
PRKDC-208ENST00000536710 LCE2CQ5TA81 110 aa8.11□□□□□ -1.11
PRKDC-208ENST00000536710 NBPF6Q5VWK0 638 aa8.11□□□□□ -1.11
PRKDC-208ENST00000536710 C12orf40Q86WS4 652 aa8.11□□□□□ -1.11
PRKDC-208ENST00000536710 NBPF4Q96M43 638 aa8.11□□□□□ -1.11
PRKDC-208ENST00000536710 A0A0A0MRY4 1105 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 GFRA2O00451 464 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 TM4SF5O14894 197 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 AOC2O75106 756 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 DLGAP3O95886 979 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 GIPRP48546 466 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 MLECQ14165 292 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 PPP2R5EQ16537 467 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 KIF4BQ2VIQ3 1234 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 AKAP4Q5JQC9 854 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 ZNF385CQ66K41 422 aaPredicted RBP8.1□□□□□ -1.11
PRKDC-208ENST00000536710 GIMAP6Q6P9H5 292 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 NOP9Q86U38 636 aaKnown RBP8.1□□□□□ -1.11
PRKDC-208ENST00000536710 WDR18Q9BV38 432 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 EHMT1Q9H9B1 1298 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 CORINQ9Y5Q5 1042 aa8.1□□□□□ -1.11
PRKDC-208ENST00000536710 HTR3BO95264 441 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 SELPP16109 830 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 PLCG1P19174 1290 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 PDE4BQ07343 736 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 EXOSC6Q5RKV6 272 aaKnown RBP8.09□□□□□ -1.11
PRKDC-208ENST00000536710 FBXO11Q86XK2 927 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 FMR1NBQ8N0W7 255 aaPredicted RBP8.09□□□□□ -1.11
PRKDC-208ENST00000536710 FAM169BQ8N8A8 192 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 OR6P1Q8NGX9 317 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 ZNF775Q96BV0 537 aaPredicted RBP8.09□□□□□ -1.11
PRKDC-208ENST00000536710 RUSC1Q9BVN2 902 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 PLVAPQ9BX97 442 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 PIF1Q9H611 641 aa8.09□□□□□ -1.11
PRKDC-208ENST00000536710 CCDC85CA6NKD9 419 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 SPDYE3A6NKU9 549 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 FAM229AH3BQW9 127 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 K7ELQ4 463 aaPredicted RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 ATE1O95260 518 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 HOXB4P17483 251 aaPredicted RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 ETF1P62495 437 aaKnown RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 SNRPNP63162 240 aaKnown RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 TRIM28Q13263 835 aaKnown RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 RAB33AQ14088 237 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 NFE2L2Q16236 605 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 ZC3H12AQ5D1E8 599 aaKnown RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 ACAD11Q709F0 780 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 ILDR2Q71H61 639 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 LSRQ86X29 649 aaPredicted RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 FAM177A1Q8N128 213 aaPredicted RBP8.08□□□□□ -1.12
PRKDC-208ENST00000536710 TRIM11Q96F44 468 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 MRFAP1L1Q96HT8 127 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 ANTXR1Q9H6X2 564 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 ACTR10Q9NZ32 417 aa8.08□□□□□ -1.12
PRKDC-208ENST00000536710 DLL1O00548 723 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 KLF4O43474 513 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 PGRP06401 933 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 ID3Q02535 119 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 LRRFIP1Q32MZ4 808 aaKnown RBP8.07□□□□□ -1.12
PRKDC-208ENST00000536710 NUTM2GQ5VZR2 741 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 LARP1BQ659C4 914 aaKnown RBP8.07□□□□□ -1.12
PRKDC-208ENST00000536710 SRPK1Q96SB4 655 aaKnown RBP8.07□□□□□ -1.12
PRKDC-208ENST00000536710 SIRPGQ9P1W8 387 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 REV1Q9UBZ9 1251 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 KLHL3Q9UH77 587 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 AP4E1Q9UPM8 1137 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 CDK11AQ9UQ88 783 aaPredicted RBP8.07□□□□□ -1.12
PRKDC-208ENST00000536710 HIF3AQ9Y2N7 669 aa8.07□□□□□ -1.12
PRKDC-208ENST00000536710 TMA7Q9Y2S6 64 aaKnown RBP8.07□□□□□ -1.12
PRKDC-208ENST00000536710 PIK3R2O00459 728 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 GNB5O14775 395 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 WISP1O95388 367 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 GRK4P32298 578 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 PPM1JQ5JR12 505 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 TREML4Q6UXN2 200 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 RUFY4Q6ZNE9 571 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 CYFIP1Q7L576 1253 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 RBBP8NLQ8NC74 664 aaPredicted RBP8.06□□□□□ -1.12
PRKDC-208ENST00000536710 ST7Q9NRC1 585 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 MKL2Q9ULH7 1088 aa8.06□□□□□ -1.12
PRKDC-208ENST00000536710 SERINC3Q13530 473 aa8.05□□□□□ -1.12
PRKDC-208ENST00000536710 PRRT3Q5FWE3 981 aa8.05□□□□□ -1.12
PRKDC-208ENST00000536710 LINC00114Q6XXX2 140 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms