RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CCDC93Q567U6 631 aa16.07■□□□□ 0.16
LIG1-203ENST00000536218 CCDC102BQ68D86 513 aa16.07■□□□□ 0.16
LIG1-203ENST00000536218 DHX32Q7L7V1 743 aaKnown RBP16.07■□□□□ 0.16
LIG1-203ENST00000536218 ARFGAP3Q9NP61 516 aa16.07■□□□□ 0.16
LIG1-203ENST00000536218 GPHNQ9NQX3 736 aaPredicted RBP16.07■□□□□ 0.16
LIG1-203ENST00000536218 CAMTA2O94983 1202 aa16.06■□□□□ 0.16
LIG1-203ENST00000536218 IVLP07476 585 aa16.06■□□□□ 0.16
LIG1-203ENST00000536218 DNAJC21Q5F1R6 531 aaKnown RBP16.06■□□□□ 0.16
LIG1-203ENST00000536218 CC2D1AQ6P1N0 951 aaPredicted RBP16.06■□□□□ 0.16
LIG1-203ENST00000536218 AHDC1Q5TGY3 1603 aaPredicted RBP16.06■□□□□ 0.16
LIG1-203ENST00000536218 LRRFIP1Q32MZ4 808 aaKnown RBP16.06■□□□□ 0.16
LIG1-203ENST00000536218 RAB11FIP4Q86YS3 637 aa16.06■□□□□ 0.16
LIG1-203ENST00000536218 PLEKHA4Q9H4M7 779 aa16.06■□□□□ 0.16
LIG1-203ENST00000536218 NCOA5Q9HCD5 579 aaKnown RBP16.06■□□□□ 0.16
LIG1-203ENST00000536218 RIC1Q4ADV7 1423 aa16.06■□□□□ 0.16
LIG1-203ENST00000536218 FGAP02671 866 aa16.06■□□□□ 0.16
LIG1-203ENST00000536218 PPM1EQ8WY54 764 aa16.06■□□□□ 0.16
LIG1-203ENST00000536218 PIH1D3Q9NQM4 214 aaKnown RBP16.06■□□□□ 0.16
LIG1-203ENST00000536218 IQSEC3Q9UPP2 1182 aaPredicted RBP16.06■□□□□ 0.16
LIG1-203ENST00000536218 GPAA1O43292 621 aa16.05■□□□□ 0.16
LIG1-203ENST00000536218 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.05■□□□□ 0.16
LIG1-203ENST00000536218 SCRN1Q12765 414 aa16.05■□□□□ 0.16
LIG1-203ENST00000536218 VGLL2Q8N8G2 317 aa16.05■□□□□ 0.16
LIG1-203ENST00000536218 APPBP2Q92624 585 aa16.05■□□□□ 0.16
LIG1-203ENST00000536218 H3BQF6 201 aa16.04■□□□□ 0.16
LIG1-203ENST00000536218 SMC2O95347 1197 aa16.04■□□□□ 0.16
LIG1-203ENST00000536218 MCM6Q14566 821 aa16.04■□□□□ 0.16
LIG1-203ENST00000536218 CCDC24Q8N4L8 307 aa16.04■□□□□ 0.16
LIG1-203ENST00000536218 CEBPZQ03701 1054 aaKnown RBP16.04■□□□□ 0.16
LIG1-203ENST00000536218 ZFYP08048 801 aaPredicted RBP16.03■□□□□ 0.16
LIG1-203ENST00000536218 PDCP20941 246 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 IQCB1Q15051 598 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 UBXN6Q9BZV1 441 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.03■□□□□ 0.164e-7■■■■□ 19.6
LIG1-203ENST00000536218 SUFUQ9UMX1 484 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 PHLPP1O60346 1717 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 DOT1LQ8TEK3 1739 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 LRP6O75581 1613 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 H3BQV1 296 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 TADA3O75528 432 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 PUM3Q15397 648 aaKnown RBP16.03■□□□□ 0.16
LIG1-203ENST00000536218 IMMTQ16891 758 aaKnown RBP16.03■□□□□ 0.16
LIG1-203ENST00000536218 IFFO2Q5TF58 517 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 TMC6Q7Z403 805 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 WWC3Q9ULE0 1092 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 HMGB1P09429 215 aaKnown RBP16.03■□□□□ 0.16
LIG1-203ENST00000536218 SFPQP23246 707 aaKnown RBP eCLIP16.03■□□□□ 0.16
LIG1-203ENST00000536218 BARGINQ6ZT62 677 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 LINC00116Q8NCU8 138 aa16.03■□□□□ 0.16
LIG1-203ENST00000536218 ALDH8A1Q9H2A2 487 aaPredicted RBP16.03■□□□□ 0.16
LIG1-203ENST00000536218 FOXP2O15409 715 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 NRDCO43847 1150 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 MAP2K2P36507 400 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 IGHMBP2P38935 993 aaKnown RBP16.02■□□□□ 0.16
LIG1-203ENST00000536218 TDO2P48775 406 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 GSDMDP57764 484 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 ETF1P62495 437 aaKnown RBP16.02■□□□□ 0.16
LIG1-203ENST00000536218 CCDC152Q4G0S7 254 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 MCTP2Q6DN12 878 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 MICALL1Q8N3F8 863 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 ANKRD20A12PQ8NF67 263 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 LPIN2Q92539 896 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 ERCC4Q92889 916 aaPredicted RBP16.02■□□□□ 0.16
LIG1-203ENST00000536218 LTBP4Q8N2S1 1624 aa16.02■□□□□ 0.16
LIG1-203ENST00000536218 WTIPA6NIX2 430 aaPredicted RBP16.02■□□□□ 0.15
LIG1-203ENST00000536218 ATP8B1O43520 1251 aa16.02■□□□□ 0.15
LIG1-203ENST00000536218 BCAMP50895 628 aa16.02■□□□□ 0.15
LIG1-203ENST00000536218 SARM1Q6SZW1 724 aa16.02■□□□□ 0.15
LIG1-203ENST00000536218 SMARCC1Q92922 1105 aaPredicted RBP16.02■□□□□ 0.15
LIG1-203ENST00000536218 ZNF532Q9HCE3 1301 aa16.02■□□□□ 0.15
LIG1-203ENST00000536218 GUCY1B3Q02153 619 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 STK11IPQ8N1F8 1099 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 AOPEPQ8N6M6 819 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 LEO1Q8WVC0 666 aaPredicted RBP16.01■□□□□ 0.15
LIG1-203ENST00000536218 SCAND2PQ9GZW5 306 aaPredicted RBP16.01■□□□□ 0.15
LIG1-203ENST00000536218 DENND2AQ9ULE3 1009 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 ZNF213O14771 459 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 TPM1P09493 284 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 SLC5A1P13866 664 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 ZSWIM4Q9H7M6 989 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.01■□□□□ 0.15
LIG1-203ENST00000536218 NUP98P52948 1817 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 EFCAB8A8MWE9 144 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 PHACTR2O75167 634 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 NTSR2O95665 410 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 ADD2P35612 726 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 MNAT1P51948 309 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 EXOSC10Q01780 885 aaKnown RBP16.01■□□□□ 0.15
LIG1-203ENST00000536218 PARP10Q53GL7 1025 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 PDE11AQ9HCR9 933 aa16.01■□□□□ 0.15
LIG1-203ENST00000536218 ERFEQ4G0M1 354 aa16■□□□□ 0.15
LIG1-203ENST00000536218 DONSONQ9NYP3 566 aa16■□□□□ 0.15
LIG1-203ENST00000536218 MROH5Q6ZUA9 1318 aa16■□□□□ 0.15
LIG1-203ENST00000536218 PLCH1Q4KWH8 1693 aa16■□□□□ 0.15
LIG1-203ENST00000536218 RASGRF1Q13972 1273 aa16■□□□□ 0.15
LIG1-203ENST00000536218 FUT8Q9BYC5 575 aa16■□□□□ 0.15
LIG1-203ENST00000536218 PARD6BQ9BYG5 372 aa16■□□□□ 0.15
LIG1-203ENST00000536218 PSD3Q9NYI0 1048 aa16■□□□□ 0.15
LIG1-203ENST00000536218 SLIT2O94813 1529 aa15.99■□□□□ 0.15
LIG1-203ENST00000536218 PDE6AP16499 860 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms