RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 ACEP12821 1306 aa4.43□□□□□ -1.7
CHMP4A-208ENST00000534106 PNPLA7Q6ZV29 1317 aa4.43□□□□□ -1.7
CHMP4A-208ENST00000534106 DHX57Q6P158 1386 aaKnown RBP4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 MAP3K5Q99683 1374 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 RREB1Q92766 1687 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 OVOS2A0A0G2JMS6 1433 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 OVOS2A0A0J9YW53 1432 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 J3QW42 95 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 ALX3O95076 343 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 PSAPP07602 524 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 SSTR4P31391 388 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 CRTC2Q53ET0 693 aaPredicted RBP4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 OVOS2Q6IE36 1432 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 ERICH6Q7L0X2 663 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 ANKMY2Q8IV38 441 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 IL22RA1Q8N6P7 574 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 TTC9Q92623 222 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 CALR3Q96L12 384 aaKnown RBP4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 SHANK3Q9BYB0 1731 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 TFCP2L1Q9NZI6 479 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 USP20Q9Y2K6 914 aa4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 COL14A1Q05707 1796 aaKnown RBP4.42□□□□□ -1.7
CHMP4A-208ENST00000534106 DLC1Q96QB1 1528 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 CASZ1Q86V15 1759 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 LOC102724428A0A0B4J2F2 783 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L15C9J2P7 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L10C9JJH3 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L13C9JLJ4 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L12C9JPN9 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L11C9JVI0 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L21D6R901 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L18D6R9N7 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L22D6RA61 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L17D6RBQ6 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L19D6RCP7 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L20D6RJB6 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 XYLBO75191 536 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 LMOD1P29536 600 aaPredicted RBP4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 NRLP54845 237 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 SIK1P57059 783 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 USP17L24Q0WX57 530 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 PTK7Q13308 1070 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 LCE3BQ5TA77 95 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 COL23A1Q86Y22 540 aaPredicted RBP4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 RGL4Q8IZJ4 473 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 DCAF11Q8TEB1 546 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 CLUAP1Q96AJ1 413 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 PLD4Q96BZ4 506 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 NSUN5Q96P11 429 aaKnown RBP4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 MRPL18Q9H0U6 180 aaKnown RBP4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 NMRK2Q9NPI5 230 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 C11orf16Q9NQ32 467 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 TLR7Q9NYK1 1049 aaKnown RBP4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 RTCBQ9Y3I0 505 aaKnown RBP4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 FMN2Q9NZ56 1722 aa4.41□□□□□ -1.7
CHMP4A-208ENST00000534106 RGPD8O14715 1765 aaPredicted RBP4.4□□□□□ -1.7
CHMP4A-208ENST00000534106 SPATA31E1Q6ZUB1 1445 aa4.4□□□□□ -1.7
CHMP4A-208ENST00000534106 ANKARQ7Z5J8 1434 aa4.4□□□□□ -1.7
CHMP4A-208ENST00000534106 DEAF1O75398 565 aaPredicted RBP4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 GLB1P16278 677 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 FSTP19883 344 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 GRNP28799 593 aaKnown RBP4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 NLRP13Q86W25 1043 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 MPHOSPH9Q99550 1183 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 CARD10Q9BWT7 1032 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 PPP1R12CQ9BZL4 782 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 USP19O94966 1318 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 CPDO75976 1380 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 ANKRD30BQ9BXX2 1392 aa4.4□□□□□ -1.71
CHMP4A-208ENST00000534106 PIK3C2GO75747 1445 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 CRB1P82279 1406 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 KIF1AQ12756 1690 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 COL5A2P05997 1499 aaPredicted RBP4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 ATP7BP35670 1465 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 ABCA3Q99758 1704 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 FAM196BA6NMK8 535 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 DLL1O00548 723 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 PAX4O43316 350 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 TOMM70O94826 608 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 MCTP1Q6DN14 999 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 SLC51AQ86UW1 340 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 TREML1Q86YW5 311 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 JMYQ8N9B5 988 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 FAM200AQ8TCP9 573 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 DDX54Q8TDD1 881 aaKnown RBP4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 WDR17Q8IZU2 1322 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 ADCY9O60503 1353 aa4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 PHRF1Q9P1Y6 1649 aaKnown RBP4.39□□□□□ -1.71
CHMP4A-208ENST00000534106 USP6P35125 1406 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 TRPM3Q9HCF6 1732 aaPredicted RBP4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 BTBD11A6QL63 1104 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 F8W735 103 aaPredicted RBP4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 GSC2O15499 205 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 MMP20O60882 483 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 RFX1P22670 979 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 IRAK1P51617 712 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 ARHGEF25Q86VW2 580 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 AMIGO3Q86WK7 504 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 MAP4K3Q8IVH8 894 aa4.38□□□□□ -1.71
CHMP4A-208ENST00000534106 DZIP1LQ8IYY4 767 aaKnown RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms