RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, human

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSDE1-215	ENST00000533818	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.58	□□□□□ -0.24
CSDE1-215	ENST00000533818	PICK1	Q9NRD5	415 aa		13.58	□□□□□ -0.24
CSDE1-215	ENST00000533818	AFG3L2	Q9Y4W6	797 aa		13.58	□□□□□ -0.24
CSDE1-215	ENST00000533818	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.58	□□□□□ -0.24
CSDE1-215	ENST00000533818	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.57	□□□□□ -0.24
CSDE1-215	ENST00000533818	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.57	□□□□□ -0.24
CSDE1-215	ENST00000533818	PRDM12	Q9H4Q4	367 aa		13.57	□□□□□ -0.24
CSDE1-215	ENST00000533818	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.57	□□□□□ -0.24
CSDE1-215	ENST00000533818	PNMA3	Q9UL41	463 aa		13.57	□□□□□ -0.24
CSDE1-215	ENST00000533818	AGTPBP1	Q9UPW5	1226 aa		13.57	□□□□□ -0.24
CSDE1-215	ENST00000533818	FAM86C2P	A6NEL3	165 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	IGKV5-2	P06315	115 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	XRCC5	P13010	732 aa	Known RBP	13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	ZKSCAN1	P17029	563 aa	Predicted RBP	13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	PTPRA	P18433	802 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	IGFBP4	P22692	258 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	GCLC	P48506	637 aa	Predicted RBP	13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	LMOD3	Q0VAK6	560 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	DUSP27	Q5VZP5	1158 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	TRMT44	Q8IYL2	757 aa	Known RBP	13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	FAM151A	Q8WW52	585 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	ZDHHC15	Q96MV8	337 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	C11orf16	Q9NQ32	467 aa		13.56	□□□□□ -0.24
CSDE1-215	ENST00000533818	PLIN1	O60240	522 aa		13.55	□□□□□ -0.24
CSDE1-215	ENST00000533818	DDX58	O95786	925 aa	Known RBP	13.55	□□□□□ -0.24
CSDE1-215	ENST00000533818	AAK1	Q2M2I8	961 aa		13.55	□□□□□ -0.24
CSDE1-215	ENST00000533818	UBE3B	Q7Z3V4	1068 aa		13.55	□□□□□ -0.24
CSDE1-215	ENST00000533818	NUDT12	Q9BQG2	462 aa		13.55	□□□□□ -0.24
CSDE1-215	ENST00000533818	MAP3K2	Q9Y2U5	619 aa		13.55	□□□□□ -0.24
CSDE1-215	ENST00000533818	ANKRD18B	A2A2Z9	1011 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	TRIM75P	A6NK02	468 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	SMIM22	K7EJ46	135 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	HIBADH	P31937	336 aa	Known RBP	13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	TFF2	Q03403	129 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	TCP10	Q12799	353 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	ADGRE1	Q14246	886 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	TREML2	Q5T2D2	321 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	SCYL3	Q8IZE3	742 aa		13.54	□□□□□ -0.24
CSDE1-215	ENST00000533818	LTBP2	Q14767	1821 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	TRIM43B	A6NCK2	446 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818		H7C1W4	665 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	CSF1R	P07333	972 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	GYG1	P46976	350 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	EPHB4	P54760	987 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	SLC39A5	Q6ZMH5	540 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	SH3RF1	Q7Z6J0	888 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	SOCS4	Q8WXH5	440 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	MRI	Q9BWK5	157 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	PDLIM7	Q9NR12	457 aa		13.53	□□□□□ -0.24
CSDE1-215	ENST00000533818	PHF20L1	A8MW92	1017 aa		13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	DNM1L	O00429	736 aa		13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	KCNQ1	P51787	676 aa		13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	NHLH1	Q02575	133 aa		13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	CCL14	Q16627	93 aa		13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	CWF19L2	Q2TBE0	894 aa	Known RBP	13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	PLA2G12B	Q9BX93	195 aa		13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	MAST2	Q6P0Q8	1798 aa		13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	TCF20	Q9UGU0	1960 aa	Known RBP	13.52	□□□□□ -0.25
CSDE1-215	ENST00000533818	TMPO	P42166	694 aa	Known RBP	13.51	□□□□□ -0.25
CSDE1-215	ENST00000533818	NEXN	Q0ZGT2	675 aa		13.51	□□□□□ -0.25
CSDE1-215	ENST00000533818	CHAF1A	Q13111	956 aa	Predicted RBP	13.51	□□□□□ -0.25
CSDE1-215	ENST00000533818	TRIM60	Q495X7	471 aa		13.51	□□□□□ -0.25
CSDE1-215	ENST00000533818	LPAR1	Q92633	364 aa		13.51	□□□□□ -0.25
CSDE1-215	ENST00000533818	FAM84B	Q96KN1	310 aa	Predicted RBP	13.51	□□□□□ -0.25
CSDE1-215	ENST00000533818	NEURL1B	A8MQ27	555 aa		13.5	□□□□□ -0.25
CSDE1-215	ENST00000533818	IFIT5	Q13325	482 aa	Known RBP	13.5	□□□□□ -0.25
CSDE1-215	ENST00000533818	TBC1D22A	Q8WUA7	517 aa		13.5	□□□□□ -0.25
CSDE1-215	ENST00000533818	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.5	□□□□□ -0.25	3e-9	■■■■□ 19.7
CSDE1-215	ENST00000533818	DDX20	Q9UHI6	824 aa	Known RBP	13.5	□□□□□ -0.25
CSDE1-215	ENST00000533818	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.5	□□□□□ -0.25
CSDE1-215	ENST00000533818	PI4KAP2	A4QPH2	592 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	MSC	O60682	206 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	ITGB8	P26012	769 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	CNGA1	P29973	690 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	PBX2	P40425	430 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	HHIPL2	Q6UWX4	724 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	KSR2	Q6VAB6	950 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	CCDC129	Q6ZRS4	1044 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	PI4KAP1	Q8N8J0	262 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	MORF4L1	Q9UBU8	362 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	DAGLA	Q9Y4D2	1042 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	LRRFIP2	Q9Y608	721 aa	Known RBP	13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	XIRP2	A4UGR9	3374 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	CHD9	Q3L8U1	2897 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	MYH3	P11055	1940 aa		13.49	□□□□□ -0.25
CSDE1-215	ENST00000533818	FRAT2	O75474	233 aa	Predicted RBP	13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	RGS2	P41220	211 aa		13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	NFIA	Q12857	509 aa		13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	SKIV2L	Q15477	1246 aa	Known RBP	13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	NEUROD2	Q15784	382 aa		13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	GJC2	Q5T442	439 aa	Predicted RBP	13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	MFSD14C	Q5VZR4	134 aa		13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	VPS37D	Q86XT2	251 aa		13.48	□□□□□ -0.25
CSDE1-215	ENST00000533818	ARRDC4	Q8NCT1	418 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 86 ms