RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ECM2O94769 699 aaPredicted RBP18.13■□□□□ 0.49
VPS28-215ENST00000531924 GNRH1P01148 92 aa18.13■□□□□ 0.49
VPS28-215ENST00000531924 SCYL3Q8IZE3 742 aa18.13■□□□□ 0.49
VPS28-215ENST00000531924 CPA4Q9UI42 421 aa18.13■□□□□ 0.49
VPS28-215ENST00000531924 PTCH2Q9Y6C5 1203 aa18.13■□□□□ 0.49
VPS28-215ENST00000531924 AK9Q5TCS8 1911 aa18.12■□□□□ 0.49
VPS28-215ENST00000531924 GPR75-ASB3A0A0A6YYF3 556 aa18.12■□□□□ 0.49
VPS28-215ENST00000531924 POTEFA5A3E0 1075 aa18.12■□□□□ 0.49
VPS28-215ENST00000531924 SLC4A8Q2Y0W8 1093 aa18.12■□□□□ 0.49
VPS28-215ENST00000531924 CCDC158Q5M9N0 1113 aa18.12■□□□□ 0.49
VPS28-215ENST00000531924 TTC39AQ5SRH9 613 aa18.12■□□□□ 0.49
VPS28-215ENST00000531924 TBC1D9Q6ZT07 1266 aa18.12■□□□□ 0.49
VPS28-215ENST00000531924 FASTKD5Q7L8L6 764 aaKnown RBP18.12■□□□□ 0.49
VPS28-215ENST00000531924 PARK7Q99497 189 aaKnown RBP18.12■□□□□ 0.49
VPS28-215ENST00000531924 FMNL1O95466 1100 aaPredicted RBP18.11■□□□□ 0.49
VPS28-215ENST00000531924 MAP4K4O95819 1239 aaPredicted RBP18.11■□□□□ 0.49
VPS28-215ENST00000531924 MYCP01106 439 aaPredicted RBP18.11■□□□□ 0.49
VPS28-215ENST00000531924 HOXD10P28358 340 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 PRMT2P55345 433 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 CAP1Q01518 475 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 PI16Q6UXB8 463 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 ITPRIPQ8IWB1 547 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 MIER1Q8N108 512 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 ARHGAP39Q9C0H5 1083 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.11■□□□□ 0.49
VPS28-215ENST00000531924 PDE4DIPQ5VU43 2346 aa18.11■□□□□ 0.49
VPS28-215ENST00000531924 DDTLA6NHG4 134 aaPredicted RBP18.1■□□□□ 0.49
VPS28-215ENST00000531924 PHF20L1A8MW92 1017 aa18.1■□□□□ 0.49
VPS28-215ENST00000531924 CTNND1O60716 968 aaKnown RBP18.1■□□□□ 0.49
VPS28-215ENST00000531924 SURF6O75683 361 aaKnown RBP18.1■□□□□ 0.49
VPS28-215ENST00000531924 ARID4AP29374 1257 aaPredicted RBP18.1■□□□□ 0.49
VPS28-215ENST00000531924 PSMC4P43686 418 aa18.1■□□□□ 0.49
VPS28-215ENST00000531924 DIEXFQ68CQ4 756 aaKnown RBP18.1■□□□□ 0.49
VPS28-215ENST00000531924 C17orf99Q6UX52 265 aa18.1■□□□□ 0.49
VPS28-215ENST00000531924 GADL1Q6ZQY3 521 aa18.1■□□□□ 0.49
VPS28-215ENST00000531924 SH3BP5LQ7L8J4 393 aa18.1■□□□□ 0.49
VPS28-215ENST00000531924 NSUN4Q96CB9 384 aaKnown RBP18.1■□□□□ 0.49
VPS28-215ENST00000531924 ZNF333Q96JL9 665 aa18.1■□□□□ 0.49
VPS28-215ENST00000531924 DDX4Q9NQI0 724 aaKnown RBP18.1■□□□□ 0.49
VPS28-215ENST00000531924 SLC34A2O95436 690 aa18.09■□□□□ 0.49
VPS28-215ENST00000531924 PTPRAP18433 802 aa18.09■□□□□ 0.49
VPS28-215ENST00000531924 EN2P19622 333 aaPredicted RBP18.09■□□□□ 0.49
VPS28-215ENST00000531924 ATP8B2P98198 1209 aa18.09■□□□□ 0.49
VPS28-215ENST00000531924 C1orf115Q9H7X2 142 aa18.09■□□□□ 0.49
VPS28-215ENST00000531924 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.09■□□□□ 0.49
VPS28-215ENST00000531924 ATRNL1Q5VV63 1379 aa18.08■□□□□ 0.49
VPS28-215ENST00000531924 NPM3O75607 178 aaKnown RBP18.08■□□□□ 0.48
VPS28-215ENST00000531924 BAG3O95817 575 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 MCAMP43121 646 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 RHBDL3P58872 404 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 TNNI3KQ59H18 835 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 NAA16Q6N069 864 aaPredicted RBP18.08■□□□□ 0.48
VPS28-215ENST00000531924 TEX11Q8IYF3 940 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 RAET1EQ8TD07 263 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 GPR108Q9NPR9 543 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 SNRKQ9NRH2 765 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 FPGT-TNNI3KV9GXZ4 949 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 HTTP42858 3142 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 MYH2Q9UKX2 1941 aa18.08■□□□□ 0.48
VPS28-215ENST00000531924 RFX7Q2KHR2 1363 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 A0A0G2JLL6 359 aaPredicted RBP18.07■□□□□ 0.48
VPS28-215ENST00000531924 TRIM75PA6NK02 468 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 CYP2C8P10632 490 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 MAP3K10Q02779 954 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 POLA2Q14181 598 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 PRRT2Q7Z6L0 340 aaPredicted RBP18.07■□□□□ 0.48
VPS28-215ENST00000531924 SSH3Q8TE77 659 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 SH3TC2Q8TF17 1288 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 AFG3L2Q9Y4W6 797 aa18.07■□□□□ 0.48
VPS28-215ENST00000531924 TBC1D12O60347 775 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 PLCG2P16885 1265 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 FCGRTP55899 365 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 MOGSQ13724 837 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 GPAT2Q6NUI2 795 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 SMCR8Q8TEV9 937 aaPredicted RBP18.06■□□□□ 0.48
VPS28-215ENST00000531924 ZNF384Q8TF68 577 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 TRIM47Q96LD4 638 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 DBNDD2Q9BQY9 259 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 OSBPL5Q9H0X9 879 aaPredicted RBP18.06■□□□□ 0.48
VPS28-215ENST00000531924 BIN2Q9UBW5 565 aaPredicted RBP18.06■□□□□ 0.48
VPS28-215ENST00000531924 SRRDQ9UH36 339 aa18.06■□□□□ 0.48
VPS28-215ENST00000531924 TRIM34Q9BYJ4 488 aa18.05■□□□□ 0.48
VPS28-215ENST00000531924 MYPNQ86TC9 1320 aa18.04■□□□□ 0.48
VPS28-215ENST00000531924 FAM196BA6NMK8 535 aa18.04■□□□□ 0.48
VPS28-215ENST00000531924 SLURP2P0DP57 97 aa18.04■□□□□ 0.48
VPS28-215ENST00000531924 OSBPP22059 807 aa18.04■□□□□ 0.48
VPS28-215ENST00000531924 SH3RF3Q8TEJ3 882 aaPredicted RBP18.04■□□□□ 0.48
VPS28-215ENST00000531924 GCC1Q96CN9 775 aa18.04■□□□□ 0.48
VPS28-215ENST00000531924 AATFQ9NY61 560 aaKnown RBP eCLIP18.04■□□□□ 0.486e-6■■■■□ 25.6
VPS28-215ENST00000531924 SLC45A1Q9Y2W3 748 aa18.04■□□□□ 0.48
VPS28-215ENST00000531924 ADGRA2Q96PE1 1338 aa18.03■□□□□ 0.48
VPS28-215ENST00000531924 ZBTB7BO15156 539 aaPredicted RBP18.03■□□□□ 0.48
VPS28-215ENST00000531924 DHX36Q9H2U1 1008 aaKnown RBP18.03■□□□□ 0.48
VPS28-215ENST00000531924 PI4KBQ9UBF8 816 aa18.03■□□□□ 0.48
VPS28-215ENST00000531924 HERC5Q9UII4 1024 aaKnown RBP18.03■□□□□ 0.48
VPS28-215ENST00000531924 PNMA3Q9UL41 463 aa18.03■□□□□ 0.48
VPS28-215ENST00000531924 DOCK2Q92608 1830 aa18.02■□□□□ 0.48
VPS28-215ENST00000531924 BCRP11274 1271 aa18.02■□□□□ 0.48
VPS28-215ENST00000531924 GRK4P32298 578 aa18.02■□□□□ 0.48
VPS28-215ENST00000531924 CCDC84Q86UT8 332 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms