RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CDAN1Q8IWY9 1227 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 TEX11Q8IYF3 940 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 OSBP2Q969R2 916 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 FSD1Q9BTV5 496 aa17.46■□□□□ 0.39
CPSF1-206ENST00000531480 PUS7LQ9H0K6 701 aaKnown RBP17.46■□□□□ 0.39
CPSF1-206ENST00000531480 MAP3K10Q02779 954 aa17.45■□□□□ 0.38
CPSF1-206ENST00000531480 SUPT20HL1Q3ZLR7 823 aa17.45■□□□□ 0.38
CPSF1-206ENST00000531480 NBPF12Q5TAG4 269 aaPredicted RBP17.45■□□□□ 0.38
CPSF1-206ENST00000531480 SH3BP5LQ7L8J4 393 aa17.45■□□□□ 0.38
CPSF1-206ENST00000531480 ZFPM1Q8IX07 1006 aa17.45■□□□□ 0.38
CPSF1-206ENST00000531480 OSBPL5Q9H0X9 879 aaPredicted RBP17.45■□□□□ 0.38
CPSF1-206ENST00000531480 NAV1Q8NEY1 1877 aa17.45■□□□□ 0.38
CPSF1-206ENST00000531480 FLT1P17948 1338 aa17.45■□□□□ 0.38
CPSF1-206ENST00000531480 OTOFQ9HC10 1997 aa17.44■□□□□ 0.38
CPSF1-206ENST00000531480 LCORLQ8N3X6 602 aa17.44■□□□□ 0.38
CPSF1-206ENST00000531480 HHIPL1Q96JK4 782 aa17.44■□□□□ 0.38
CPSF1-206ENST00000531480 GBA2Q9HCG7 927 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-206ENST00000531480 TLL2Q9Y6L7 1015 aa17.44■□□□□ 0.38
CPSF1-206ENST00000531480 UNCXA6NJT0 531 aa17.43■□□□□ 0.38
CPSF1-206ENST00000531480 MBD4O95243 580 aa17.43■□□□□ 0.38
CPSF1-206ENST00000531480 HSPA1AP0DMV8 641 aaKnown RBP17.43■□□□□ 0.38
CPSF1-206ENST00000531480 HSPA1BP0DMV9 641 aaKnown RBP17.43■□□□□ 0.38
CPSF1-206ENST00000531480 TCP10Q12799 353 aa17.43■□□□□ 0.38
CPSF1-206ENST00000531480 SAPCD2Q86UD0 394 aa17.43■□□□□ 0.38
CPSF1-206ENST00000531480 METTL16Q86W50 562 aaKnown RBP17.43■□□□□ 0.38
CPSF1-206ENST00000531480 TGFBRAP1Q8WUH2 860 aa17.43■□□□□ 0.38
CPSF1-206ENST00000531480 STRBPQ96SI9 672 aaKnown RBP17.43■□□□□ 0.38
CPSF1-206ENST00000531480 DDTLA6NHG4 134 aaPredicted RBP17.42■□□□□ 0.38
CPSF1-206ENST00000531480 TRIM6-TRIM34B2RNG4 842 aa17.42■□□□□ 0.38
CPSF1-206ENST00000531480 SDSP20132 328 aa17.42■□□□□ 0.38
CPSF1-206ENST00000531480 NF2P35240 595 aa17.42■□□□□ 0.38
CPSF1-206ENST00000531480 SKAP1Q86WV1 359 aa17.42■□□□□ 0.38
CPSF1-206ENST00000531480 HOOK2Q96ED9 719 aa17.42■□□□□ 0.38
CPSF1-206ENST00000531480 CRNKL1Q9BZJ0 848 aaKnown RBP17.42■□□□□ 0.38
CPSF1-206ENST00000531480 DHX36Q9H2U1 1008 aaKnown RBP17.42■□□□□ 0.38
CPSF1-206ENST00000531480 ARMT1Q9H993 441 aa17.42■□□□□ 0.38
CPSF1-206ENST00000531480 HELLSQ9NRZ9 838 aa17.42■□□□□ 0.38
CPSF1-206ENST00000531480 BAZ2AQ9UIF9 1905 aaKnown RBP17.41■□□□□ 0.38
CPSF1-206ENST00000531480 LAMB1P07942 1786 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 RASSF10A6NK89 507 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 M0R2C6 588 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 TBC1D12O60347 775 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 PICALMQ13492 652 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 LDLRAD1Q5T700 205 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 C2orf69Q8N8R5 385 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 RILPL2Q969X0 211 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 AIDAQ96BJ3 306 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 DCP1AQ9NPI6 582 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-206ENST00000531480 ATP8A2Q9NTI2 1148 aa17.41■□□□□ 0.38
CPSF1-206ENST00000531480 GPAA1O43292 621 aa17.4■□□□□ 0.38
CPSF1-206ENST00000531480 USP2O75604 605 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-206ENST00000531480 BMP2KLQ5H9B9 411 aa17.4■□□□□ 0.38
CPSF1-206ENST00000531480 GIMAP6Q6P9H5 292 aa17.4■□□□□ 0.38
CPSF1-206ENST00000531480 MAPKAPK5Q8IW41 473 aa17.4■□□□□ 0.38
CPSF1-206ENST00000531480 SEC62Q99442 399 aaKnown RBP17.4■□□□□ 0.38
CPSF1-206ENST00000531480 ZNF408Q9H9D4 720 aa17.4■□□□□ 0.38
CPSF1-206ENST00000531480 ZNF112Q9UJU3 913 aa17.4■□□□□ 0.38
CPSF1-206ENST00000531480 A0A0D9SFI3 127 aa17.39■□□□□ 0.37
CPSF1-206ENST00000531480 HIP1O00291 1037 aa17.39■□□□□ 0.37
CPSF1-206ENST00000531480 PPP1R12BO60237 982 aaPredicted RBP17.39■□□□□ 0.37
CPSF1-206ENST00000531480 GNAT2P19087 354 aa17.39■□□□□ 0.37
CPSF1-206ENST00000531480 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.39■□□□□ 0.37
CPSF1-206ENST00000531480 FAM227BQ96M60 508 aa17.39■□□□□ 0.37
CPSF1-206ENST00000531480 CSRNP1Q96S65 589 aa17.39■□□□□ 0.37
CPSF1-206ENST00000531480 GSG1L2A8MUP6 293 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 FOXP2O15409 715 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 PRKAB2O43741 272 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 USP5P45974 858 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 MCMDC2Q4G0Z9 681 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 COL13A1Q5TAT6 717 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-206ENST00000531480 DCAF15Q66K64 600 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 ARMC9Q7Z3E5 817 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 SDR42E1Q8WUS8 393 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 EHD4Q9H223 541 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 PI4KBQ9UBF8 816 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 TAOK2Q9UL54 1235 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 THSD7BQ9C0I4 1608 aa17.38■□□□□ 0.37
CPSF1-206ENST00000531480 PHF20L1A8MW92 1017 aa17.37■□□□□ 0.37
CPSF1-206ENST00000531480 NMIQ13287 307 aaPredicted RBP17.37■□□□□ 0.37
CPSF1-206ENST00000531480 MOB2Q70IA6 237 aa17.37■□□□□ 0.37
CPSF1-206ENST00000531480 HERC5Q9UII4 1024 aaKnown RBP17.37■□□□□ 0.37
CPSF1-206ENST00000531480 PALD1Q9ULE6 856 aa17.37■□□□□ 0.37
CPSF1-206ENST00000531480 ABT1Q9ULW3 272 aaKnown RBP17.37■□□□□ 0.37
CPSF1-206ENST00000531480 ANGEL1Q9UNK9 670 aaKnown RBP17.37■□□□□ 0.37
CPSF1-206ENST00000531480 SLC4A4Q9Y6R1 1079 aa17.37■□□□□ 0.37
CPSF1-206ENST00000531480 PATL2C9JE40 543 aaKnown RBP17.36■□□□□ 0.37
CPSF1-206ENST00000531480 IREB2P48200 963 aaKnown RBP17.36■□□□□ 0.37
CPSF1-206ENST00000531480 HUNKP57058 714 aa17.36■□□□□ 0.37
CPSF1-206ENST00000531480 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-206ENST00000531480 FOXP4Q8IVH2 680 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-206ENST00000531480 ZSCAN29Q8IWY8 852 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-206ENST00000531480 ZNF341Q9BYN7 854 aa17.36■□□□□ 0.37
CPSF1-206ENST00000531480 DNAJC18Q9H819 358 aa17.36■□□□□ 0.37
CPSF1-206ENST00000531480 EPB41L4AQ9HCS5 686 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-206ENST00000531480 FZD1Q9UP38 647 aa17.36■□□□□ 0.37
CPSF1-206ENST00000531480 UBE2Q2LH0YL09 131 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 CHMLP26374 656 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 GABPAQ06546 454 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 DEFB115Q30KQ5 88 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 SBK1Q52WX2 424 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms