RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, human

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USF1-208	ENST00000528768	NEK1	Q96PY6	1258 aa		13.89	□□□□□ -0.19
USF1-208	ENST00000528768	POLL	Q9UGP5	575 aa		13.89	□□□□□ -0.19
USF1-208	ENST00000528768	UQCRFS1P1	P0C7P4	283 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	ITGA6	P23229	1130 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	MMP14	P50281	582 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	ZNF445	P59923	1031 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	FGD1	P98174	961 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	SF3B3	Q15393	1217 aa	Known RBP	13.88	□□□□□ -0.19
USF1-208	ENST00000528768	CCDC83	Q8IWF9	413 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	TTLL11	Q8NHH1	800 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	XAGE2	Q96GT9	111 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.88	□□□□□ -0.19
USF1-208	ENST00000528768	KIF3A	Q9Y496	699 aa		13.88	□□□□□ -0.19
USF1-208	ENST00000528768	DOK7	Q18PE1	504 aa		13.87	□□□□□ -0.19
USF1-208	ENST00000528768	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.87	□□□□□ -0.19
USF1-208	ENST00000528768	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.87	□□□□□ -0.19
USF1-208	ENST00000528768	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.87	□□□□□ -0.19
USF1-208	ENST00000528768	TBC1D16	Q8TBP0	767 aa		13.87	□□□□□ -0.19
USF1-208	ENST00000528768	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.87	□□□□□ -0.19
USF1-208	ENST00000528768	EDC3	Q96F86	508 aa	Known RBP	13.87	□□□□□ -0.19
USF1-208	ENST00000528768	PUS3	Q9BZE2	481 aa	Known RBP	13.87	□□□□□ -0.19
USF1-208	ENST00000528768	PODXL2	Q9NZ53	605 aa		13.87	□□□□□ -0.19
USF1-208	ENST00000528768	MROH5	Q6ZUA9	1318 aa		13.87	□□□□□ -0.19
USF1-208	ENST00000528768	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.86	□□□□□ -0.19
USF1-208	ENST00000528768	UBE2Q2L	H0YL09	131 aa		13.86	□□□□□ -0.19
USF1-208	ENST00000528768	USP17L8	P0C7I0	530 aa		13.86	□□□□□ -0.19
USF1-208	ENST00000528768	XRCC6	P12956	609 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
USF1-208	ENST00000528768	GJB2	P29033	226 aa		13.86	□□□□□ -0.19
USF1-208	ENST00000528768	GPSM2	P81274	684 aa		13.86	□□□□□ -0.19
USF1-208	ENST00000528768	TTLL12	Q14166	644 aa	Predicted RBP	13.86	□□□□□ -0.19
USF1-208	ENST00000528768	CAVIN1	Q6NZI2	390 aa	Known RBP	13.86	□□□□□ -0.19
USF1-208	ENST00000528768	MYOZ2	Q9NPC6	264 aa		13.86	□□□□□ -0.19
USF1-208	ENST00000528768	KCNQ5	Q9NR82	932 aa		13.86	□□□□□ -0.19
USF1-208	ENST00000528768	LETM1	O95202	739 aa	Predicted RBP	13.85	□□□□□ -0.19
USF1-208	ENST00000528768	F13A1	P00488	732 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	CPA1	P15085	419 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	SYT1	P21579	422 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	ARMC9	Q7Z3E5	817 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	TMEM87A	Q8NBN3	555 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	ERO1A	Q96HE7	468 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	BRPF3	Q9ULD4	1205 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	RIPOR2	Q9Y4F9	1068 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	TRIM17	Q9Y577	477 aa		13.85	□□□□□ -0.19
USF1-208	ENST00000528768	ASTN2	O75129	1339 aa	Predicted RBP	13.85	□□□□□ -0.19
USF1-208	ENST00000528768	POTEF	A5A3E0	1075 aa		13.84	□□□□□ -0.19
USF1-208	ENST00000528768	SLC5A1	P13866	664 aa		13.84	□□□□□ -0.19
USF1-208	ENST00000528768	RPS8	P62241	208 aa	Known RBP	13.84	□□□□□ -0.19
USF1-208	ENST00000528768	ME3	Q16798	604 aa		13.84	□□□□□ -0.19
USF1-208	ENST00000528768	CCDC152	Q4G0S7	254 aa		13.84	□□□□□ -0.19
USF1-208	ENST00000528768	LARP1B	Q659C4	914 aa	Known RBP	13.84	□□□□□ -0.19
USF1-208	ENST00000528768	DHX32	Q7L7V1	743 aa	Known RBP	13.84	□□□□□ -0.19
USF1-208	ENST00000528768	APPBP2	Q92624	585 aa		13.84	□□□□□ -0.19
USF1-208	ENST00000528768	CELF1	Q92879	486 aa	Known RBP	13.84	□□□□□ -0.19
USF1-208	ENST00000528768	MANSC4	A6NHS7	340 aa	Predicted RBP	13.83	□□□□□ -0.2
USF1-208	ENST00000528768	PDE8B	O95263	885 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	IGHMBP2	P38935	993 aa	Known RBP	13.83	□□□□□ -0.2
USF1-208	ENST00000528768	PUM3	Q15397	648 aa	Known RBP	13.83	□□□□□ -0.2
USF1-208	ENST00000528768	IMMT	Q16891	758 aa	Known RBP	13.83	□□□□□ -0.2
USF1-208	ENST00000528768	ZSCAN23	Q3MJ62	389 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	OTOP1	Q7RTM1	612 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	PODN	Q7Z5L7	613 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	LPIN2	Q92539	896 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	ARMC5	Q96C12	935 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.83	□□□□□ -0.2
USF1-208	ENST00000528768	GML	Q99445	158 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	MPHOSPH8	Q99549	860 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	LLPH	Q9BRT6	129 aa	Known RBP	13.83	□□□□□ -0.2
USF1-208	ENST00000528768	TMEM106C	Q9BVX2	250 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	GREM2	Q9H772	168 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	GGA1	Q9UJY5	639 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	TPCN1	Q9ULQ1	816 aa		13.83	□□□□□ -0.2
USF1-208	ENST00000528768	MKI67	P46013	3256 aa	Known RBP	13.82	□□□□□ -0.2
USF1-208	ENST00000528768	KIAA0100	Q14667	2235 aa	Known RBP	13.82	□□□□□ -0.2
USF1-208	ENST00000528768	USP17L3	A6NCW0	530 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	USP17L4	A6NCW7	530 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	CYP21A2	P08686	494 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	ARHGEF6	Q15052	776 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	SPRYD7	Q5W111	196 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	OTUD7B	Q6GQQ9	843 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	CCDC129	Q6ZRS4	1044 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	MOB2	Q70IA6	237 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	USP17L1	Q7RTZ2	530 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	OGFOD1	Q8N543	542 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	ANKIB1	Q9P2G1	1089 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	PTPN22	Q9Y2R2	807 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	NDUFB9	Q9Y6M9	179 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	MAST3	O60307	1309 aa		13.82	□□□□□ -0.2
USF1-208	ENST00000528768	VPS37C	A5D8V6	355 aa	Predicted RBP	13.81	□□□□□ -0.2
USF1-208	ENST00000528768	UNCX	A6NJT0	531 aa		13.81	□□□□□ -0.2
USF1-208	ENST00000528768	UFL1	O94874	794 aa		13.81	□□□□□ -0.2
USF1-208	ENST00000528768	LARGE1	O95461	756 aa		13.81	□□□□□ -0.2
USF1-208	ENST00000528768	ZBTB48	P10074	688 aa	Predicted RBP	13.81	□□□□□ -0.2
USF1-208	ENST00000528768	HSPD1	P10809	573 aa	Known RBP	13.81	□□□□□ -0.2
USF1-208	ENST00000528768	ADORA1	P30542	326 aa		13.81	□□□□□ -0.2
USF1-208	ENST00000528768	UBE2H	P62256	183 aa		13.81	□□□□□ -0.2
USF1-208	ENST00000528768	HMGN5	P82970	282 aa	Known RBP	13.81	□□□□□ -0.2
USF1-208	ENST00000528768		Q6ZUG5	572 aa		13.81	□□□□□ -0.2
USF1-208	ENST00000528768	FAM43A	Q8N2R8	423 aa		13.81	□□□□□ -0.2
USF1-208	ENST00000528768	TRIM44	Q96DX7	344 aa	Predicted RBP	13.81	□□□□□ -0.2
USF1-208	ENST00000528768	SEC62	Q99442	399 aa	Known RBP	13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms