RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MOGSQ13724 837 aa13.08□□□□□ -0.32
CD44-227ENST00000528086 REM2Q8IYK8 340 aaPredicted RBP13.08□□□□□ -0.32
CD44-227ENST00000528086 SH3RF3Q8TEJ3 882 aaPredicted RBP13.08□□□□□ -0.32
CD44-227ENST00000528086 YTHDC1Q96MU7 727 aaKnown RBP13.08□□□□□ -0.32
CD44-227ENST00000528086 WRNIP1Q96S55 665 aa13.08□□□□□ -0.32
CD44-227ENST00000528086 MCOLN1Q9GZU1 580 aa13.08□□□□□ -0.32
CD44-227ENST00000528086 RAI14Q9P0K7 980 aa13.08□□□□□ -0.32
CD44-227ENST00000528086 ZSWIM8A7E2V4 1837 aa13.07□□□□□ -0.32
CD44-227ENST00000528086 MANSC4A6NHS7 340 aaPredicted RBP13.07□□□□□ -0.32
CD44-227ENST00000528086 FAM196BA6NMK8 535 aa13.07□□□□□ -0.32
CD44-227ENST00000528086 SMARCA5O60264 1052 aaPredicted RBP13.07□□□□□ -0.32
CD44-227ENST00000528086 NPM3O75607 178 aaKnown RBP13.07□□□□□ -0.32
CD44-227ENST00000528086 CHGBP05060 677 aa13.07□□□□□ -0.32
CD44-227ENST00000528086 PPP4CP60510 307 aa13.07□□□□□ -0.32
CD44-227ENST00000528086 CCDC158Q5M9N0 1113 aa13.07□□□□□ -0.32
CD44-227ENST00000528086 ZNF296Q8WUU4 475 aaPredicted RBP13.07□□□□□ -0.32
CD44-227ENST00000528086 EDC3Q96F86 508 aaKnown RBP13.07□□□□□ -0.32
CD44-227ENST00000528086 ABHD8Q96I13 439 aa13.07□□□□□ -0.32
CD44-227ENST00000528086 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.07□□□□□ -0.32
CD44-227ENST00000528086 DOCK1Q14185 1865 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 CENPFP49454 3210 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 GPR25O00155 361 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 IRF6O14896 467 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 CAPN15O75808 1086 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 RRP1P56182 461 aaKnown RBP13.06□□□□□ -0.32
CD44-227ENST00000528086 DYNLL1P63167 89 aaKnown RBP13.06□□□□□ -0.32
CD44-227ENST00000528086 PICALMQ13492 652 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 SLFNL1Q499Z3 407 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 ERC1Q8IUD2 1116 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 KIF1BPQ96EK5 621 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 OTUD5Q96G74 571 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 ZNF341Q9BYN7 854 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 LRP2BPQ9P2M1 347 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 ATAD5Q96QE3 1844 aa13.06□□□□□ -0.32
CD44-227ENST00000528086 DDX60LQ5H9U9 1706 aaKnown RBP13.05□□□□□ -0.32
CD44-227ENST00000528086 COL2A1P02458 1487 aaPredicted RBP13.05□□□□□ -0.32
CD44-227ENST00000528086 JAG1P78504 1218 aa13.05□□□□□ -0.32
CD44-227ENST00000528086 SREBF2Q12772 1141 aa13.05□□□□□ -0.32
CD44-227ENST00000528086 NOM1Q5C9Z4 860 aaKnown RBP13.05□□□□□ -0.32
CD44-227ENST00000528086 NOL9Q5SY16 702 aaKnown RBP13.05□□□□□ -0.32
CD44-227ENST00000528086 ERO1BQ86YB8 467 aa13.05□□□□□ -0.32
CD44-227ENST00000528086 FAM43AQ8N2R8 423 aa13.05□□□□□ -0.32
CD44-227ENST00000528086 OSBPL5Q9H0X9 879 aaPredicted RBP13.05□□□□□ -0.32
CD44-227ENST00000528086 DCTPP1Q9H773 170 aa13.05□□□□□ -0.32
CD44-227ENST00000528086 AATFQ9NY61 560 aaKnown RBP eCLIP13.05□□□□□ -0.32
CD44-227ENST00000528086 MYH1P12882 1939 aa13.05□□□□□ -0.32
CD44-227ENST00000528086 RAB11FIP3O75154 756 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 LDHCP07864 332 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 INHBEP58166 350 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 CRHR2Q13324 411 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 SHROOM1Q2M3G4 852 aaPredicted RBP13.04□□□□□ -0.32
CD44-227ENST00000528086 HSP90AB4PQ58FF6 505 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 DCAF15Q66K64 600 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 NAA16Q6N069 864 aaPredicted RBP13.04□□□□□ -0.32
CD44-227ENST00000528086 CCDC84Q86UT8 332 aaPredicted RBP13.04□□□□□ -0.32
CD44-227ENST00000528086 SLF2Q8IX21 1173 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 DNAJC18Q9H819 358 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 KCNH4Q9UQ05 1017 aa13.04□□□□□ -0.32
CD44-227ENST00000528086 MYH7P12883 1935 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 CCL15-CCL14A0A0B4J2E2 113 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 TCRBV5S4A2TA0A5A2 114 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 BTBD19C9JJ37 291 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 HMMRO75330 724 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 GSTO1P78417 241 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 EVX2Q03828 476 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 PPIL2Q13356 520 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 DGKZQ13574 1117 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 CCL15Q16663 113 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 TEX11Q8IYF3 940 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.03□□□□□ -0.32
CD44-227ENST00000528086 CRBNQ96SW2 442 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 RIOK1Q9BRS2 568 aaKnown RBP13.03□□□□□ -0.32
CD44-227ENST00000528086 CSADQ9Y600 493 aa13.03□□□□□ -0.32
CD44-227ENST00000528086 TBC1D12O60347 775 aa13.02□□□□□ -0.33
CD44-227ENST00000528086 IDH1O75874 414 aaKnown RBP13.02□□□□□ -0.33
CD44-227ENST00000528086 CYP7A1P22680 504 aa13.02□□□□□ -0.33
CD44-227ENST00000528086 GPAT2Q6NUI2 795 aa13.02□□□□□ -0.33
CD44-227ENST00000528086 METTL16Q86W50 562 aaKnown RBP13.02□□□□□ -0.33
CD44-227ENST00000528086 CLASRPQ8N2M8 674 aaKnown RBP13.02□□□□□ -0.33
CD44-227ENST00000528086 MAGEB6Q8N7X4 407 aa13.02□□□□□ -0.33
CD44-227ENST00000528086 MIGA1Q8NAN2 632 aa13.02□□□□□ -0.33
CD44-227ENST00000528086 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.02□□□□□ -0.33
CD44-227ENST00000528086 TGFBRAP1Q8WUH2 860 aa13.02□□□□□ -0.33
CD44-227ENST00000528086 FLT1P17948 1338 aa13.02□□□□□ -0.33
CD44-227ENST00000528086 MAP4K4O95819 1239 aaPredicted RBP13.01□□□□□ -0.33
CD44-227ENST00000528086 PTPRAP18433 802 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 ATP5JP18859 108 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 GTF2A2P52657 109 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 PPATQ06203 517 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 MAPKAPK5Q8IW41 473 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 ZSCAN29Q8IWY8 852 aaPredicted RBP13.01□□□□□ -0.33
CD44-227ENST00000528086 OTUD7AQ8TE49 926 aaPredicted RBP13.01□□□□□ -0.33
CD44-227ENST00000528086 HOOK2Q96ED9 719 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 BOLA2Q9H3K6 86 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 AFG3L2Q9Y4W6 797 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 ADGRA2Q96PE1 1338 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 BRCA2P51587 3418 aa13.01□□□□□ -0.33
CD44-227ENST00000528086 SMIM22K7EJ46 135 aa13□□□□□ -0.33
CD44-227ENST00000528086 GOLIM4O00461 696 aa13□□□□□ -0.33
CD44-227ENST00000528086 ALDH1A1P00352 501 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms