RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 RPAP1Q9BWH6 1393 aaPredicted RBP19.46■□□□□ 0.71
LSM1-204ENST00000522515 NPM3O75607 178 aaKnown RBP19.44■□□□□ 0.7
LSM1-204ENST00000522515 REC8O95072 547 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 FGAP02671 866 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 GIMAP6Q6P9H5 292 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 ZC3H15Q8WU90 426 aaKnown RBP19.44■□□□□ 0.7
LSM1-204ENST00000522515 MAP4K1Q92918 833 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 BACH2Q9BYV9 841 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 OSBPL5Q9H0X9 879 aaPredicted RBP19.44■□□□□ 0.7
LSM1-204ENST00000522515 GPBP1L1Q9HC44 474 aaPredicted RBP19.44■□□□□ 0.7
LSM1-204ENST00000522515 PGAP2Q9UHJ9 254 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 NAV1Q8NEY1 1877 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 ENTPD3O75355 529 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 YY1P25490 414 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 TDO2P48775 406 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 NACAP1Q9BZK3 213 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 MCM9Q9NXL9 1143 aa19.44■□□□□ 0.7
LSM1-204ENST00000522515 SAP30BPQ9UHR5 308 aaKnown RBP19.44■□□□□ 0.7
LSM1-204ENST00000522515 BAZ2AQ9UIF9 1905 aaKnown RBP19.44■□□□□ 0.7
LSM1-204ENST00000522515 DDX60LQ5H9U9 1706 aaKnown RBP19.43■□□□□ 0.7
LSM1-204ENST00000522515 TNFAIP1Q13829 316 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 RASA3Q14644 834 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 ALX1Q15699 326 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 FAM83AQ86UY5 434 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 APOBEC3FQ8IUX4 373 aaKnown RBP19.43■□□□□ 0.7
LSM1-204ENST00000522515 FAM151AQ8WW52 585 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 DCPSQ96C86 337 aaKnown RBP19.43■□□□□ 0.7
LSM1-204ENST00000522515 DDRGK1Q96HY6 314 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 NAPBQ9H115 298 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 PALD1Q9ULE6 856 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 CLEC11AQ9Y240 323 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 PITPNM2Q9BZ72 1349 aa19.43■□□□□ 0.7
LSM1-204ENST00000522515 USP17L12C9JPN9 530 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 USP17L21D6R901 530 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 SLC4A8Q2Y0W8 1093 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 CTR9Q6PD62 1173 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 SH3BP5LQ7L8J4 393 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 TMEM39BQ9GZU3 492 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 DEFB129Q9H1M3 183 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 MYH1P12882 1939 aa19.42■□□□□ 0.7
LSM1-204ENST00000522515 POLR2AP24928 1970 aaKnown RBP19.41■□□□□ 0.7
LSM1-204ENST00000522515 CYP2D7A0A087X1C5 515 aa19.41■□□□□ 0.7
LSM1-204ENST00000522515 DDTLA6NHG4 134 aaPredicted RBP19.41■□□□□ 0.7
LSM1-204ENST00000522515 TNNI2P48788 182 aa19.41■□□□□ 0.7
LSM1-204ENST00000522515 EVX2Q03828 476 aa19.41■□□□□ 0.7
LSM1-204ENST00000522515 USP26Q9BXU7 913 aa19.41■□□□□ 0.7
LSM1-204ENST00000522515 RBM8AQ9Y5S9 174 aaKnown RBP19.41■□□□□ 0.7
LSM1-204ENST00000522515 ZMYM6O95789 1325 aa19.41■□□□□ 0.7
LSM1-204ENST00000522515 SMIM22K7EJ46 135 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 CYP2D6P10635 497 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 CDAN1Q8IWY9 1227 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 ARPP21Q9UBL0 812 aaPredicted RBP19.4■□□□□ 0.7
LSM1-204ENST00000522515 U3KPZ7 1027 aaPredicted RBP19.4■□□□□ 0.7
LSM1-204ENST00000522515 ATRNL1Q5VV63 1379 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 EIF5BO60841 1220 aaKnown RBP19.4■□□□□ 0.7
LSM1-204ENST00000522515 POLR3DP05423 398 aaPredicted RBP19.4■□□□□ 0.7
LSM1-204ENST00000522515 PLCD1P51178 756 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 SBK1Q52WX2 424 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 KRT26Q7Z3Y9 468 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 LDHDQ86WU2 507 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 SULF1Q8IWU6 871 aa19.4■□□□□ 0.7
LSM1-204ENST00000522515 ZSCAN29Q8IWY8 852 aaPredicted RBP19.4■□□□□ 0.7
LSM1-204ENST00000522515 COL2A1P02458 1487 aaPredicted RBP19.39■□□□□ 0.69
LSM1-204ENST00000522515 MINDY4BA8MYZ0 360 aa19.39■□□□□ 0.69
LSM1-204ENST00000522515 ADM5C9JUS6 153 aa19.39■□□□□ 0.69
LSM1-204ENST00000522515 NECTIN1Q15223 517 aa19.39■□□□□ 0.69
LSM1-204ENST00000522515 C12orf60Q5U649 245 aa19.39■□□□□ 0.69
LSM1-204ENST00000522515 MAP1SQ66K74 1059 aaPredicted RBP19.39■□□□□ 0.69
LSM1-204ENST00000522515 DLK2Q6UY11 383 aa19.39■□□□□ 0.69
LSM1-204ENST00000522515 TEPSINQ96N21 525 aa19.39■□□□□ 0.69
LSM1-204ENST00000522515 DHX36Q9H2U1 1008 aaKnown RBP19.39■□□□□ 0.69
LSM1-204ENST00000522515 CTNNA3Q9UI47 895 aa19.39■□□□□ 0.69
LSM1-204ENST00000522515 KIF3CO14782 793 aa19.38■□□□□ 0.69
LSM1-204ENST00000522515 EPB41L2O43491 1005 aaKnown RBP19.38■□□□□ 0.69
LSM1-204ENST00000522515 HAND2P61296 217 aa19.38■□□□□ 0.69
LSM1-204ENST00000522515 PRAMEF18Q5VWM3 479 aa19.38■□□□□ 0.69
LSM1-204ENST00000522515 USP48Q86UV5 1035 aa19.38■□□□□ 0.69
LSM1-204ENST00000522515 GLIS2Q9BZE0 524 aaPredicted RBP19.38■□□□□ 0.69
LSM1-204ENST00000522515 PPARAQ07869 468 aa19.37■□□□□ 0.69
LSM1-204ENST00000522515 TTC6Q86TZ1 520 aa19.37■□□□□ 0.69
LSM1-204ENST00000522515 AMOTL1Q8IY63 956 aa19.37■□□□□ 0.69
LSM1-204ENST00000522515 ZNF784Q8NCA9 323 aaPredicted RBP19.37■□□□□ 0.69
LSM1-204ENST00000522515 CSRNP1Q96S65 589 aa19.37■□□□□ 0.69
LSM1-204ENST00000522515 PPP2R3BQ9Y5P8 575 aa19.37■□□□□ 0.69
LSM1-204ENST00000522515 LAMB1P07942 1786 aa19.37■□□□□ 0.69
LSM1-204ENST00000522515 SIPA1L1O43166 1804 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 ZNF213O14771 459 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 CYP21A2P08686 494 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 SLURP2P0DP57 97 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 IMMTQ16891 758 aaKnown RBP19.36■□□□□ 0.69
LSM1-204ENST00000522515 NBPF12Q5TAG4 269 aaPredicted RBP19.36■□□□□ 0.69
LSM1-204ENST00000522515 CDC37L1Q7L3B6 337 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 SLC27A2O14975 620 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 HLA-DOAP06340 250 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 CTDSPL2Q05D32 466 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 CREB3L3Q68CJ9 461 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 STK11IPQ8N1F8 1099 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 DYNLL2Q96FJ2 89 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 NBPF3Q9H094 633 aa19.36■□□□□ 0.69
LSM1-204ENST00000522515 PI4KBQ9UBF8 816 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms