RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SPATA31A1Q5TZJ5 1347 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 TNKSO95271 1327 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 KIF5BP33176 963 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 PCMTD1Q96MG8 357 aaPredicted RBP11.68□□□□□ -0.54
MCF2-209ENST00000520602 VPS54Q9P1Q0 977 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 RGPD2P0DJD1 1756 aa11.68□□□□□ -0.54
MCF2-209ENST00000520602 CCDC194A0A1B0GVG4 234 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 TRIM75PA6NK02 468 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 MPHOSPH10O00566 681 aaKnown RBP11.67□□□□□ -0.54
MCF2-209ENST00000520602 SH2B2O14492 632 aaPredicted RBP11.67□□□□□ -0.54
MCF2-209ENST00000520602 UFL1O94874 794 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 DEXIO95424 95 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 DHX8Q14562 1220 aaKnown RBP11.67□□□□□ -0.54
MCF2-209ENST00000520602 CAMTA2O94983 1202 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 TBC1D9BQ66K14 1250 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 FAM196AQ6ZSG2 479 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 ZNF804AQ7Z570 1209 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 KRI1Q8N9T8 703 aaKnown RBP11.67□□□□□ -0.54
MCF2-209ENST00000520602 FANCBQ8NB91 859 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 SMARCC2Q8TAQ2 1214 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 DHX58Q96C10 678 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 CLIC6Q96NY7 704 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 KIF1AQ12756 1690 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 NEDD4P46934 1319 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 YEATS4O95619 227 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 PICALMQ13492 652 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 INTS5Q6P9B9 1019 aaKnown RBP11.67□□□□□ -0.54
MCF2-209ENST00000520602 SMARCE1Q969G3 411 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 ZNF287Q9HBT7 754 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 DACH1Q9UI36 760 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 CACNA1FO60840 1977 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 COL15A1P39059 1388 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 TNNT1P13805 278 aa11.67□□□□□ -0.54
MCF2-209ENST00000520602 CCDC47Q96A33 483 aaKnown RBP11.67□□□□□ -0.54
MCF2-209ENST00000520602 CTDNEP1O95476 244 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 ZNF174Q15697 407 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 CCDC112Q8NEF3 446 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 IFNKQ9P0W0 207 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 KCNH3Q9ULD8 1083 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 RTL9Q8NET4 1388 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 SKILP12757 684 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 PFKFB1P16118 471 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 ZNF622Q969S3 477 aaKnown RBP eCLIP11.66□□□□□ -0.54
MCF2-209ENST00000520602 RTEL1Q9NZ71 1219 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 MINPP1Q9UNW1 487 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 FAM208AQ9UK61 1670 aaKnown RBP11.66□□□□□ -0.54
MCF2-209ENST00000520602 CBFA2T2O43439 604 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 ZNF75DP51815 510 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 KIF23Q02241 960 aaPredicted RBP11.66□□□□□ -0.54
MCF2-209ENST00000520602 TSR1Q2NL82 804 aaKnown RBP11.66□□□□□ -0.54
MCF2-209ENST00000520602 LINC00301Q8NCQ3 95 aa11.66□□□□□ -0.54
MCF2-209ENST00000520602 ZNF804BA4D1E1 1349 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 GSTO1P78417 241 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 CLEC4GQ6UXB4 293 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 HEATR3Q7Z4Q2 680 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 SENP2Q9HC62 589 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 GSG1L2A8MUP6 293 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 POLR2DO15514 142 aaKnown RBP11.65□□□□□ -0.54
MCF2-209ENST00000520602 KRT2P35908 639 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 LRMPQ12912 555 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 PTPN14Q15678 1187 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 FILIP1LQ4L180 1135 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 MAPKAPK5Q8IW41 473 aa11.65□□□□□ -0.54
MCF2-209ENST00000520602 GPR101Q96P66 508 aaPredicted RBP11.65□□□□□ -0.54
MCF2-209ENST00000520602 TOP1P11387 765 aaKnown RBP11.65□□□□□ -0.55
MCF2-209ENST00000520602 ARID4AP29374 1257 aaPredicted RBP11.65□□□□□ -0.55
MCF2-209ENST00000520602 CDC27P30260 824 aa11.65□□□□□ -0.55
MCF2-209ENST00000520602 MCM7P33993 719 aa11.65□□□□□ -0.55
MCF2-209ENST00000520602 UBASH3AP57075 661 aa11.65□□□□□ -0.55
MCF2-209ENST00000520602 ANTXR2P58335 489 aa11.65□□□□□ -0.55
MCF2-209ENST00000520602 TFAP4Q01664 338 aa11.65□□□□□ -0.55
MCF2-209ENST00000520602 RILPL1Q5EBL4 403 aa11.65□□□□□ -0.55
MCF2-209ENST00000520602 TGFBRAP1Q8WUH2 860 aa11.65□□□□□ -0.55
MCF2-209ENST00000520602 BSDC1Q9NW68 430 aaPredicted RBP11.65□□□□□ -0.55
MCF2-209ENST00000520602 SEC63Q9UGP8 760 aaKnown RBP11.65□□□□□ -0.55
MCF2-209ENST00000520602 C11orf57Q6ZUT1 292 aaPredicted RBP11.64□□□□□ -0.55
MCF2-209ENST00000520602 TICAM2Q86XR7 235 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 CPLX3Q8WVH0 158 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 ZSCAN10Q96SZ4 725 aaPredicted RBP11.64□□□□□ -0.55
MCF2-209ENST00000520602 KIAA1468Q9P260 1216 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 NRBP1Q9UHY1 535 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 CALM1P0DP23 149 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 CALM2P0DP24 149 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 CALM3P0DP25 149 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 NOSTRINQ8IVI9 506 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 PDLIM2Q96JY6 352 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 VWA3AA6NCI4 1184 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 NR5A1Q13285 461 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 PNOCQ13519 176 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 LINC00116Q8NCU8 138 aa11.64□□□□□ -0.55
MCF2-209ENST00000520602 ZC3H12CQ9C0D7 883 aaKnown RBP11.64□□□□□ -0.55
MCF2-209ENST00000520602 NTSR2O95665 410 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 FDPSP14324 419 aaKnown RBP11.63□□□□□ -0.55
MCF2-209ENST00000520602 PRDX5P30044 214 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 STX17P56962 302 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 TEX11Q8IYF3 940 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 CDK5RAP3Q96JB5 506 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 GOLPH3LQ9H4A5 285 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 PPFIBP1Q86W92 1011 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 CRACR2BQ8N4Y2 399 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms