RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 H2AFXP16104 143 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 BMS1Q14692 1282 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 NAPBQ9H115 298 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 NFE2L3Q9Y4A8 694 aa10.64□□□□□ -0.71
LIMCH1-215ENST00000512632 UBN2Q6ZU65 1347 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 TMEM94Q12767 1356 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 ADAMTS7Q9UKP4 1686 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 ANKRD18BA2A2Z9 1011 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 GNG11P61952 73 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 SSRP1Q08945 709 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 USP49Q70CQ1 688 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 DIS3L2Q8IYB7 885 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 ARMT1Q9H993 441 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 LY9Q9HBG7 655 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 SERTAD1Q9UHV2 236 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 PRKAB2O43741 272 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 CUTAO60888 179 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 PRR29P0C7W0 189 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 NR5A1Q13285 461 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 KRI1Q8N9T8 703 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 NUP133Q8WUM0 1156 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 STRBPQ96SI9 672 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 TMOD3Q9NYL9 352 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 TRMT112Q9UI30 125 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 SEC31AO94979 1220 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 MBD4O95243 580 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 FMR1Q06787 632 aaKnown RBP eCLIP10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 DESI2Q9BSY9 194 aa10.63□□□□□ -0.71
LIMCH1-215ENST00000512632 IRS4O14654 1257 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 POLR3GO15318 223 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 ARFGEF2Q9Y6D5 1785 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 IL2RBP14784 551 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 KARSQ15046 597 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 SAFBQ15424 915 aaKnown RBP eCLIP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 MAGEB6Q8N7X4 407 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 BAG1Q99933 345 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 FBXO3Q9UK99 471 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 PPP2R2CQ9Y2T4 447 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 TACC3Q9Y6A5 838 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 ABCC6O95255 1503 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 PDE8BO95263 885 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 TOB1P50616 345 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 EVA1CP58658 441 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 KLHL10Q6JEL2 608 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 TMCO3Q6UWJ1 677 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 NOSTRINQ8IVI9 506 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 IFNL3Q8IZI9 196 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 TMEM87BQ96K49 555 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 WDR24Q96S15 920 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 ZSWIM4Q9H7M6 989 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 SAMSN1Q9NSI8 373 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 MAN1B1Q9UKM7 699 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 SPATA31A3Q5VYP0 1347 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 PNMA6AP0CW24 399 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 KCNJ6P48051 423 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 TRIM28Q13263 835 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 UBE3CQ15386 1083 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 NLRP10Q86W26 655 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 CPLX3Q8WVH0 158 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 PCDHB6Q9Y5E3 794 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 FHOD1Q9Y613 1164 aa10.62□□□□□ -0.71
LIMCH1-215ENST00000512632 hCG_1642624A0A1W2PR95 340 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 TTF1Q15361 905 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 IRX2Q9BZI1 471 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 EPB41L4AQ9HCS5 686 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 WDR17Q8IZU2 1322 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 VWA3AA6NCI4 1184 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 STX17P56962 302 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 POSTNQ15063 836 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 TEX35Q5T0J7 233 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 GIGYF2Q6Y7W6 1299 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 WDR19Q8NEZ3 1342 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 CCP110O43303 1012 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 ZSCAN12O43309 604 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 CASP1P29466 404 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 TOGARAM2Q6ZUX3 1019 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 MIGA1Q8NAN2 632 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 PARP3Q9Y6F1 533 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 LMTK3Q96Q04 1460 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 ARHGAP6O43182 974 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 CTSWP56202 376 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 MTF1Q14872 753 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 OXER1Q8TDS5 423 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 NOL10Q9BSC4 688 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 FAM53CQ9NYF3 392 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 IQSEC3Q9UPP2 1182 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 CAMTA1Q9Y6Y1 1673 aa10.61□□□□□ -0.71
LIMCH1-215ENST00000512632 AFMP43652 599 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 PLA2G4AP47712 749 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 TDO2P48775 406 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 DHX8Q14562 1220 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 TMEM139Q8IV31 216 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 PIGBQ92521 554 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 SMARCE1Q969G3 411 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 CABP5Q9NP86 173 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 PHLPP2Q6ZVD8 1323 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 A0A0G2JS52 829 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 TADA3O75528 432 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 MFSD6Q6ZSS7 791 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms