RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 TMOD3Q9NYL9 352 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 ASAP1Q9ULH1 1129 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 HIP1O00291 1037 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 N4BP1O75113 896 aaKnown RBP10.35□□□□□ -0.75
HPS4-217ENST00000496385 PRPF6O94906 941 aaKnown RBP10.35□□□□□ -0.75
HPS4-217ENST00000496385 FSBPO95073 299 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 LIG3P49916 1009 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 SCRN1Q12765 414 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 NCAPHQ15003 741 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 NKX1-1Q15270 411 aaPredicted RBP10.35□□□□□ -0.75
HPS4-217ENST00000496385 ZKSCAN8Q15776 578 aaPredicted RBP10.35□□□□□ -0.75
HPS4-217ENST00000496385 PRPF40BQ6NWY9 871 aaKnown RBP10.35□□□□□ -0.75
HPS4-217ENST00000496385 B4GALNT4Q76KP1 1039 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 TMEM139Q8IV31 216 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 SSH3Q8TE77 659 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 FAXDC2Q96IV6 333 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 SNRKQ9NRH2 765 aa10.35□□□□□ -0.75
HPS4-217ENST00000496385 N4BP2Q86UW6 1770 aaPredicted RBP10.35□□□□□ -0.75
HPS4-217ENST00000496385 SHTN1A0MZ66 631 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 H0YHG0 523 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 RNF40O75150 1001 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 WDHD1O75717 1129 aaPredicted RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 GLRX3O76003 335 aaKnown RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 SLC4A2P04920 1241 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 NF2P35240 595 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 ADD1P35611 737 aaKnown RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 SARNPP82979 210 aaKnown RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 WLSQ5T9L3 541 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 BLOC1S2Q6QNY1 142 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 FMR1NBQ8N0W7 255 aaPredicted RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 XAGE2Q96GT9 111 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 LLPHQ9BRT6 129 aaKnown RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 ITGB4P16144 1822 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 ANKRD33BA6NCL7 494 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 H3BQV1 296 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 TOP1P11387 765 aaKnown RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 EZH2Q15910 746 aaKnown RBP10.34□□□□□ -0.75
HPS4-217ENST00000496385 HSP90AB4PQ58FF6 505 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 IFFO2Q5TF58 517 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 SDF4Q9BRK5 362 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 GOLPH3LQ9H4A5 285 aa10.34□□□□□ -0.75
HPS4-217ENST00000496385 PNMA6EA0A0J9YXQ4 647 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 PTCD1O75127 700 aaKnown RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 UBASH3AP57075 661 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 TEFQ10587 303 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 NBPF10Q6P3W6 841 aaKnown RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 YTHDF3Q7Z739 585 aaKnown RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 CCDC12Q8WUD4 166 aaPredicted RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 MRPS27Q92552 414 aaKnown RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 MAP4K1Q92918 833 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 SMARCC1Q92922 1105 aaPredicted RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 FAM212AQ96EL1 285 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 BAG1Q99933 345 aaPredicted RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 HMG20BQ9P0W2 317 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 BTAF1O14981 1849 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 RPS6KB1P23443 525 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 ARHGAP25P42331 645 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 PLCB4Q15147 1175 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 WHAMMP3Q1A5X7 153 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 NBPF9Q3BBW0 867 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 CREB3L3Q68CJ9 461 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 ADALQ6DHV7 355 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 MAGEC3Q8TD91 643 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 JPH2Q9BR39 696 aaPredicted RBP10.33□□□□□ -0.76
HPS4-217ENST00000496385 CDHR2Q9BYE9 1310 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 PXDNLA1KZ92 1463 aa10.33□□□□□ -0.76
HPS4-217ENST00000496385 ANKRD65E5RJM6 399 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 KCNQ3O43525 872 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 IFIT2P09913 472 aaKnown RBP10.32□□□□□ -0.76
HPS4-217ENST00000496385 PPFIA1Q13136 1202 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 ANKRD18AQ8IVF6 992 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 CCDC50Q8IVM0 306 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 FSIP1Q8NA03 581 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 PNKPQ96T60 521 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 SLC52A2Q9HAB3 445 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 TNS1Q9HBL0 1735 aaKnown RBP10.32□□□□□ -0.76
HPS4-217ENST00000496385 NHSQ6T4R5 1651 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 SCN11AQ9UI33 1791 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 A0A1B0GUA9 196 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 SYF2O95926 243 aaKnown RBP10.32□□□□□ -0.76
HPS4-217ENST00000496385 PTH1RQ03431 593 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 TBX2Q13207 712 aaPredicted RBP10.32□□□□□ -0.76
HPS4-217ENST00000496385 DPCR1Q3MIW9 517 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 FBXW10Q5XX13 1052 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 BRF1Q92994 677 aa10.32□□□□□ -0.76
HPS4-217ENST00000496385 FNTAP49354 379 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 IRAK1P51617 712 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 ICA1Q05084 483 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 KRT32Q14532 448 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 MICALCLQ6ZW33 695 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 FAM76AQ8TAV0 307 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 RHPN1Q8TCX5 695 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 PAGR1Q9BTK6 254 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 TRIM6Q9C030 488 aaPredicted RBP10.31□□□□□ -0.76
HPS4-217ENST00000496385 BCL9O00512 1426 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 CACNA1FO60840 1977 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 CTAGE15A4D2H0 777 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 CTAGE8P0CG41 777 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 SCP2P22307 547 aa10.31□□□□□ -0.76
HPS4-217ENST00000496385 CCT5P48643 541 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms