RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CD96P40200 585 aa8.27□□□□□ -1.09
VPS50-219ENST00000495039 GRM2Q14416 872 aa8.27□□□□□ -1.09
VPS50-219ENST00000495039 ZNF124Q15973 351 aa8.27□□□□□ -1.09
VPS50-219ENST00000495039 LRRN4CLQ8ND94 238 aa8.27□□□□□ -1.09
VPS50-219ENST00000495039 DUSP23Q9BVJ7 150 aa8.27□□□□□ -1.09
VPS50-219ENST00000495039 OXCT1P55809 520 aa8.26□□□□□ -1.09
VPS50-219ENST00000495039 ANGEL2Q5VTE6 544 aaKnown RBP8.26□□□□□ -1.09
VPS50-219ENST00000495039 DTHD1Q6ZMT9 781 aa8.26□□□□□ -1.09
VPS50-219ENST00000495039 KSR1Q8IVT5 923 aa8.26□□□□□ -1.09
VPS50-219ENST00000495039 TMC1Q8TDI8 760 aa8.26□□□□□ -1.09
VPS50-219ENST00000495039 TMEM39AQ9NV64 488 aa8.26□□□□□ -1.09
VPS50-219ENST00000495039 GPN3Q9UHW5 284 aaPredicted RBP8.26□□□□□ -1.09
VPS50-219ENST00000495039 GPR182O15218 404 aa8.25□□□□□ -1.09
VPS50-219ENST00000495039 KCNB2Q92953 911 aa8.25□□□□□ -1.09
VPS50-219ENST00000495039 NIF3L1Q9GZT8 377 aa8.25□□□□□ -1.09
VPS50-219ENST00000495039 SSU72Q9NP77 194 aaKnown RBP8.25□□□□□ -1.09
VPS50-219ENST00000495039 SLC23A3Q6PIS1 610 aa8.24□□□□□ -1.09
VPS50-219ENST00000495039 PDZD3Q86UT5 571 aa8.24□□□□□ -1.09
VPS50-219ENST00000495039 TOP6BLQ8N6T0 577 aa8.24□□□□□ -1.09
VPS50-219ENST00000495039 SLC38A3Q99624 504 aa8.24□□□□□ -1.09
VPS50-219ENST00000495039 IGHA2P01877 340 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 NEFMP07197 916 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 ITIH2P19823 946 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS50-219ENST00000495039 ISL2Q96A47 359 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 DMRTB1Q96MA1 342 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 CSRNP1Q96S65 589 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 PPP4R2Q9NY27 417 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 PLAGL2Q9UPG8 496 aa8.23□□□□□ -1.09
VPS50-219ENST00000495039 XRCC5P13010 732 aaKnown RBP8.22□□□□□ -1.09
VPS50-219ENST00000495039 FCGRTP55899 365 aa8.22□□□□□ -1.09
VPS50-219ENST00000495039 SULF2Q8IWU5 870 aa8.22□□□□□ -1.09
VPS50-219ENST00000495039 RNF214Q8ND24 703 aa8.22□□□□□ -1.09
VPS50-219ENST00000495039 FLAD1Q8NFF5 587 aa8.22□□□□□ -1.09
VPS50-219ENST00000495039 EPS8L3Q8TE67 593 aaKnown RBP8.22□□□□□ -1.09
VPS50-219ENST00000495039 ALKBH8Q96BT7 664 aaKnown RBP8.22□□□□□ -1.09
VPS50-219ENST00000495039 TNKS2Q9H2K2 1166 aa8.22□□□□□ -1.09
VPS50-219ENST00000495039 SNX11Q9Y5W9 270 aa8.22□□□□□ -1.09
VPS50-219ENST00000495039 ERVK-24P63145 666 aa8.21□□□□□ -1.1
VPS50-219ENST00000495039 ZC3H12AQ5D1E8 599 aaKnown RBP8.21□□□□□ -1.1
VPS50-219ENST00000495039 KRTAP4-9Q9BYQ8 210 aa8.21□□□□□ -1.1
VPS50-219ENST00000495039 NLRP2Q9NX02 1062 aa8.21□□□□□ -1.1
VPS50-219ENST00000495039 FBLN7Q53RD9 439 aa8.2□□□□□ -1.1
VPS50-219ENST00000495039 SPOCD1Q6ZMY3 1216 aa8.2□□□□□ -1.1
VPS50-219ENST00000495039 ASB11Q8WXH4 323 aa8.2□□□□□ -1.1
VPS50-219ENST00000495039 EMILIN2Q9BXX0 1053 aa8.2□□□□□ -1.1
VPS50-219ENST00000495039 C1orf115Q9H7X2 142 aa8.2□□□□□ -1.1
VPS50-219ENST00000495039 GTF2IRD1Q9UHL9 959 aa8.2□□□□□ -1.1
VPS50-219ENST00000495039 ARNTP27540 789 aa8.19□□□□□ -1.1
VPS50-219ENST00000495039 MAP1SQ66K74 1059 aaPredicted RBP8.19□□□□□ -1.1
VPS50-219ENST00000495039 ZSWIM9Q86XI8 627 aa8.19□□□□□ -1.1
VPS50-219ENST00000495039 FAM84AQ96KN4 292 aa8.19□□□□□ -1.1
VPS50-219ENST00000495039 FAM53CQ9NYF3 392 aa8.19□□□□□ -1.1
VPS50-219ENST00000495039 LRRC10BA6NIK2 292 aa8.18□□□□□ -1.1
VPS50-219ENST00000495039 IKZF1Q13422 519 aa8.18□□□□□ -1.1
VPS50-219ENST00000495039 BHLHE22Q8NFJ8 381 aaPredicted RBP8.18□□□□□ -1.1
VPS50-219ENST00000495039 STK35Q8TDR2 534 aa8.18□□□□□ -1.1
VPS50-219ENST00000495039 HEXIM2Q96MH2 286 aaKnown RBP8.18□□□□□ -1.1
VPS50-219ENST00000495039 IGF2BP3O00425 579 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS50-219ENST00000495039 NME2P22392 152 aa8.17□□□□□ -1.1
VPS50-219ENST00000495039 MESP2Q0VG99 397 aa8.17□□□□□ -1.1
VPS50-219ENST00000495039 KCNMB1Q16558 191 aa8.17□□□□□ -1.1
VPS50-219ENST00000495039 LCE4AQ5TA78 99 aa8.17□□□□□ -1.1
VPS50-219ENST00000495039 ACSBG1Q96GR2 724 aa8.17□□□□□ -1.1
VPS50-219ENST00000495039 RBCK1Q9BYM8 510 aa8.17□□□□□ -1.1
VPS50-219ENST00000495039 BCO2Q9BYV7 579 aa8.17□□□□□ -1.1
VPS50-219ENST00000495039 ZP2Q05996 745 aa8.16□□□□□ -1.1
VPS50-219ENST00000495039 GPBAR1Q8TDU6 330 aa8.16□□□□□ -1.1
VPS50-219ENST00000495039 PRDM10Q9NQV6 1147 aa8.16□□□□□ -1.1
VPS50-219ENST00000495039 PRDM7Q9NQW5 492 aa8.16□□□□□ -1.1
VPS50-219ENST00000495039 AKAP2Q9Y2D5 859 aa8.16□□□□□ -1.1
VPS50-219ENST00000495039 ZNF252P-AS1Q0IIN9 211 aa8.15□□□□□ -1.1
VPS50-219ENST00000495039 KRTAP19-4Q3LI73 84 aa8.15□□□□□ -1.1
VPS50-219ENST00000495039 PI16Q6UXB8 463 aa8.15□□□□□ -1.1
VPS50-219ENST00000495039 FAM214BQ7L5A3 538 aa8.15□□□□□ -1.1
VPS50-219ENST00000495039 TXNDC2Q86VQ3 553 aa8.15□□□□□ -1.1
VPS50-219ENST00000495039 SPACA3Q8IXA5 215 aa8.15□□□□□ -1.1
VPS50-219ENST00000495039 CBX8Q9HC52 389 aa8.15□□□□□ -1.1
VPS50-219ENST00000495039 GNAT3A8MTJ3 354 aa8.14□□□□□ -1.11
VPS50-219ENST00000495039 PICK1Q9NRD5 415 aa8.14□□□□□ -1.11
VPS50-219ENST00000495039 CACNA2D2Q9NY47 1150 aa8.14□□□□□ -1.11
VPS50-219ENST00000495039 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS50-219ENST00000495039 ZNF503-AS2A6NEH8 195 aa8.13□□□□□ -1.11
VPS50-219ENST00000495039 CLCN7P51798 805 aa8.13□□□□□ -1.11
VPS50-219ENST00000495039 MLANAQ16655 118 aa8.13□□□□□ -1.11
VPS50-219ENST00000495039 PPM1JQ5JR12 505 aa8.13□□□□□ -1.11
VPS50-219ENST00000495039 CTNND2Q9UQB3 1225 aa8.13□□□□□ -1.11
VPS50-219ENST00000495039 SAMM50Q9Y512 469 aa8.12□□□□□ -1.11
VPS50-219ENST00000495039 PITPNM2Q9BZ72 1349 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 FANCGO15287 622 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 NTF4P34130 210 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 AFMP43652 599 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 NKPD1Q17RQ9 610 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 NXPE4Q6UWF7 544 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 CCER1Q8TC90 406 aaPredicted RBP8.11□□□□□ -1.11
VPS50-219ENST00000495039 TOX2Q96NM4 488 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 PPP1R16BQ96T49 567 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 PRDM5Q9NQX1 630 aaPredicted RBP8.11□□□□□ -1.11
VPS50-219ENST00000495039 CSADQ9Y600 493 aa8.11□□□□□ -1.11
VPS50-219ENST00000495039 TRIM37O94972 964 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms