RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 OTUD7BQ6GQQ9 843 aa40.62■■■■■ 4.09
CBX4-203ENST00000494546 NAA16Q6N069 864 aaPredicted RBP40.62■■■■■ 4.09
CBX4-203ENST00000494546 ERO1BQ86YB8 467 aa40.62■■■■■ 4.09
CBX4-203ENST00000494546 ZNF296Q8WUU4 475 aaPredicted RBP40.62■■■■■ 4.09
CBX4-203ENST00000494546 KIF1BPQ96EK5 621 aa40.62■■■■■ 4.09
CBX4-203ENST00000494546 MS4A4AQ96JQ5 239 aa40.62■■■■■ 4.09
CBX4-203ENST00000494546 YTHDC1Q96MU7 727 aaKnown RBP40.62■■■■■ 4.09
CBX4-203ENST00000494546 CFHR5Q9BXR6 569 aa40.62■■■■■ 4.09
CBX4-203ENST00000494546 BCL11AQ9H165 835 aa40.62■■■■■ 4.09
CBX4-203ENST00000494546 NOL10Q9BSC4 688 aaKnown RBP40.61■■■■■ 4.09
CBX4-203ENST00000494546 TESPA1A2RU30 521 aaPredicted RBP40.6■■■■■ 4.09
CBX4-203ENST00000494546 GTF2A2P52657 109 aa40.6■■■■■ 4.09
CBX4-203ENST00000494546 SH3BP5LQ7L8J4 393 aa40.6■■■■■ 4.09
CBX4-203ENST00000494546 PTPN18Q99952 460 aa40.6■■■■■ 4.09
CBX4-203ENST00000494546 PIH1D3Q9NQM4 214 aaKnown RBP40.6■■■■■ 4.09
CBX4-203ENST00000494546 ZNF112Q9UJU3 913 aa40.6■■■■■ 4.09
CBX4-203ENST00000494546 LAMB1P07942 1786 aa40.6■■■■■ 4.09
CBX4-203ENST00000494546 CLASRPQ8N2M8 674 aaKnown RBP40.59■■■■■ 4.09
CBX4-203ENST00000494546 CCL15-CCL14A0A0B4J2E2 113 aa40.58■■■■■ 4.09
CBX4-203ENST00000494546 DDTLA6NHG4 134 aaPredicted RBP40.58■■■■■ 4.09
CBX4-203ENST00000494546 CCL15Q16663 113 aa40.58■■■■■ 4.09
CBX4-203ENST00000494546 MAP4K4O95819 1239 aaPredicted RBP40.57■■■■■ 4.09
CBX4-203ENST00000494546 NOM1Q5C9Z4 860 aaKnown RBP40.57■■■■■ 4.09
CBX4-203ENST00000494546 BRI3BPQ8WY22 251 aa40.57■■■■■ 4.09
CBX4-203ENST00000494546 NDUFB9Q9Y6M9 179 aa40.57■■■■■ 4.09
CBX4-203ENST00000494546 RAB11FIP3O75154 756 aa40.56■■■■■ 4.08
CBX4-203ENST00000494546 CTU1Q7Z7A3 348 aaKnown RBP40.56■■■■■ 4.08
CBX4-203ENST00000494546 AATFQ9NY61 560 aaKnown RBP eCLIP40.56■■■■■ 4.08
CBX4-203ENST00000494546 ATRNL1Q5VV63 1379 aa40.56■■■■■ 4.08
CBX4-203ENST00000494546 BAG3O95817 575 aa40.55■■■■■ 4.08
CBX4-203ENST00000494546 TEX11Q8IYF3 940 aa40.55■■■■■ 4.08
CBX4-203ENST00000494546 MAST2Q6P0Q8 1798 aa40.55■■■■■ 4.08
CBX4-203ENST00000494546 DOCK2Q92608 1830 aa40.54■■■■■ 4.08
CBX4-203ENST00000494546 IRF6O14896 467 aa40.54■■■■■ 4.08
CBX4-203ENST00000494546 FKTNO75072 461 aa40.54■■■■■ 4.08
CBX4-203ENST00000494546 IDH1O75874 414 aaKnown RBP40.54■■■■■ 4.08
CBX4-203ENST00000494546 PPIL2Q13356 520 aa40.54■■■■■ 4.08
CBX4-203ENST00000494546 SH3RF3Q8TEJ3 882 aaPredicted RBP40.54■■■■■ 4.08
CBX4-203ENST00000494546 NPM3O75607 178 aaKnown RBP40.53■■■■■ 4.08
CBX4-203ENST00000494546 IFIT2P09913 472 aaKnown RBP40.53■■■■■ 4.08
CBX4-203ENST00000494546 PPATQ06203 517 aa40.53■■■■■ 4.08
CBX4-203ENST00000494546 ADGRA1Q86SQ6 560 aa40.53■■■■■ 4.08
CBX4-203ENST00000494546 CCDC85CA6NKD9 419 aa40.52■■■■■ 4.08
CBX4-203ENST00000494546 CRHR2Q13324 411 aa40.52■■■■■ 4.08
CBX4-203ENST00000494546 IGSF3O75054 1194 aa40.51■■■■■ 4.08
CBX4-203ENST00000494546 SLURP2P0DP57 97 aa40.51■■■■■ 4.08
CBX4-203ENST00000494546 CETPP11597 493 aa40.51■■■■■ 4.08
CBX4-203ENST00000494546 SNAPC2Q13487 334 aa40.51■■■■■ 4.08
CBX4-203ENST00000494546 NOL9Q5SY16 702 aaKnown RBP40.51■■■■■ 4.08
CBX4-203ENST00000494546 ANTXR1Q9H6X2 564 aa40.51■■■■■ 4.08
CBX4-203ENST00000494546 PLCG2P16885 1265 aa40.5■■■■■ 4.07
CBX4-203ENST00000494546 OSBPL5Q9H0X9 879 aaPredicted RBP40.5■■■■■ 4.07
CBX4-203ENST00000494546 PHF20L1A8MW92 1017 aa40.49■■■■■ 4.07
CBX4-203ENST00000494546 CYP7A1P22680 504 aa40.49■■■■■ 4.07
CBX4-203ENST00000494546 MYO5AQ9Y4I1 1855 aaKnown RBP40.49■■■■■ 4.07
CBX4-203ENST00000494546 PPP4CP60510 307 aa40.48■■■■■ 4.07
CBX4-203ENST00000494546 MAP3K10Q02779 954 aa40.48■■■■■ 4.07
CBX4-203ENST00000494546 FAM43AQ8N2R8 423 aa40.48■■■■■ 4.07
CBX4-203ENST00000494546 SCYL3Q8IZE3 742 aa40.46■■■■■ 4.07
CBX4-203ENST00000494546 MAGEB6Q8N7X4 407 aa40.46■■■■■ 4.07
CBX4-203ENST00000494546 MAP3K12Q12852 859 aa40.45■■■■■ 4.07
CBX4-203ENST00000494546 TAF1CQ15572 869 aaPredicted RBP40.45■■■■■ 4.07
CBX4-203ENST00000494546 TGFBRAP1Q8WUH2 860 aa40.45■■■■■ 4.07
CBX4-203ENST00000494546 PICK1Q9NRD5 415 aa40.45■■■■■ 4.07
CBX4-203ENST00000494546 RRP1P56182 461 aaKnown RBP40.44■■■■■ 4.06
CBX4-203ENST00000494546 COL2A1P02458 1487 aaPredicted RBP40.44■■■■■ 4.06
CBX4-203ENST00000494546 FAM196BA6NMK8 535 aa40.43■■■■■ 4.06
CBX4-203ENST00000494546 DYNLL1P63167 89 aaKnown RBP40.43■■■■■ 4.06
CBX4-203ENST00000494546 XPO5Q9HAV4 1204 aaKnown RBP eCLIP40.43■■■■■ 4.067e-7■□□□□ 11.3
CBX4-203ENST00000494546 BTBD19C9JJ37 291 aa40.42■■■■■ 4.06
CBX4-203ENST00000494546 TBC1D12O60347 775 aa40.42■■■■■ 4.06
CBX4-203ENST00000494546 MAPKAPK5Q8IW41 473 aa40.42■■■■■ 4.06
CBX4-203ENST00000494546 MIGA1Q8NAN2 632 aa40.42■■■■■ 4.06
CBX4-203ENST00000494546 DNAJC2Q99543 621 aaKnown RBP40.42■■■■■ 4.06
CBX4-203ENST00000494546 LRRCC1Q9C099 1032 aa40.42■■■■■ 4.06
CBX4-203ENST00000494546 ZFYVE28Q9HCC9 887 aa40.42■■■■■ 4.06
CBX4-203ENST00000494546 KCNH4Q9UQ05 1017 aa40.42■■■■■ 4.06
CBX4-203ENST00000494546 TTF1Q15361 905 aaPredicted RBP40.41■■■■■ 4.06
CBX4-203ENST00000494546 PPIL4Q8WUA2 492 aaKnown RBP eCLIP40.41■■■■■ 4.06
CBX4-203ENST00000494546 CTNND1O60716 968 aaKnown RBP40.4■■■■■ 4.06
CBX4-203ENST00000494546 PKN2Q16513 984 aaKnown RBP40.4■■■■■ 4.06
CBX4-203ENST00000494546 ZHX2Q9Y6X8 837 aa40.4■■■■■ 4.06
CBX4-203ENST00000494546 FLT1P17948 1338 aa40.4■■■■■ 4.06
CBX4-203ENST00000494546 PTPRAP18433 802 aa40.39■■■■■ 4.06
CBX4-203ENST00000494546 GOLIM4O00461 696 aa40.38■■■■■ 4.05
CBX4-203ENST00000494546 SMARCA5O60264 1052 aaPredicted RBP40.38■■■■■ 4.05
CBX4-203ENST00000494546 DHX36Q9H2U1 1008 aaKnown RBP40.38■■■■■ 4.05
CBX4-203ENST00000494546 ZCCHC17Q9NP64 241 aaKnown RBP40.37■■■■■ 4.05
CBX4-203ENST00000494546 SP3Q02447 781 aa40.36■■■■■ 4.05
CBX4-203ENST00000494546 ERO1AQ96HE7 468 aa40.36■■■■■ 4.05
CBX4-203ENST00000494546 PI4KBQ9UBF8 816 aa40.36■■■■■ 4.05
CBX4-203ENST00000494546 CXCL11O14625 94 aa40.35■■■■■ 4.05
CBX4-203ENST00000494546 TMED8Q6PL24 325 aaPredicted RBP40.35■■■■■ 4.05
CBX4-203ENST00000494546 CD99L2Q8TCZ2 262 aa40.35■■■■■ 4.05
CBX4-203ENST00000494546 BOLA2Q9H3K6 86 aa40.35■■■■■ 4.05
CBX4-203ENST00000494546 FRMD4AQ9P2Q2 1039 aaPredicted RBP40.35■■■■■ 4.05
CBX4-203ENST00000494546 TRIM17Q9Y577 477 aa40.35■■■■■ 4.05
CBX4-203ENST00000494546 CERS3Q8IU89 383 aa40.34■■■■■ 4.05
CBX4-203ENST00000494546 SAP30BPQ9UHR5 308 aaKnown RBP40.34■■■■■ 4.05
CBX4-203ENST00000494546 HERC5Q9UII4 1024 aaKnown RBP40.34■■■■■ 4.05
Retrieved 100 of 20,778 RNA–protein pairs in 180.9 ms