RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HGSNATQ68CP4 663 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 TMEM40Q8WWA1 233 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 FAM126AQ9BYI3 521 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 ATXN7L1Q9ULK2 861 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 CORINQ9Y5Q5 1042 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 SOBPA7XYQ1 873 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 MLECQ14165 292 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 CBX2Q14781 532 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 TMEM67Q5HYA8 995 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 SYT9Q86SS6 491 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 PDZD3Q86UT5 571 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 NIM1KQ8IY84 436 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 CHAC2Q8WUX2 184 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 ZNF669Q96BR6 464 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 SPATA9Q9BWV2 254 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 SH2B1Q9NRF2 756 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-212ENST00000493341 SLC12A7Q9Y666 1083 aa6.35□□□□□ -1.39
VPS13A-212ENST00000493341 CCDC194A0A1B0GVG4 234 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 UPK3BL1B0FP48 263 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 UPK3BL2E5RIL1 263 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 GSTP1P09211 210 aaKnown RBP6.34□□□□□ -1.39
VPS13A-212ENST00000493341 FGFR3P22607 806 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 CDC25BP30305 580 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 WIPI1Q5MNZ9 446 aaPredicted RBP6.34□□□□□ -1.39
VPS13A-212ENST00000493341 UNC5AQ6ZN44 842 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 UBR7Q8N806 425 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 NINJ1Q92982 152 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 GTPBP3Q969Y2 492 aaKnown RBP6.34□□□□□ -1.39
VPS13A-212ENST00000493341 MFSD3Q96ES6 412 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 TRERF1Q96PN7 1200 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 TRIM33Q9UPN9 1127 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 RIPOR2Q9Y4F9 1068 aa6.34□□□□□ -1.39
VPS13A-212ENST00000493341 MEIS3P2A8K0S8 358 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 TPD52L2O43399 206 aaKnown RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 ACRP10323 421 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 FAM50AQ14320 339 aaKnown RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 TM4SF20Q53R12 229 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 KIAA1211LQ6NV74 962 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 TRIM22Q8IYM9 498 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 ZBTB38Q8NAP3 1195 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 SGSM3Q96HU1 749 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 SMG9Q9H0W8 520 aaKnown RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 PDZRN3Q9UPQ7 1066 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 LTBP3Q9NS15 1303 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 LOC102724159A0A0B4J2E5 919 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 PLEKHD1A6NEE1 506 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 STAT3P40763 770 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 CABP4P57796 275 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 NFKB2Q00653 900 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 CTBSQ01459 385 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 EXOSC10Q01780 885 aaKnown RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 AP3B2Q13367 1082 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 INPP5AQ14642 412 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 NCAPHQ15003 741 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 PWP2Q15269 919 aaKnown RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 PERM1Q5SV97 790 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 OVOS1Q6IE37 1185 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 GDF6Q6KF10 455 aaPredicted RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 ELMSAN1Q6PJG2 1045 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 LRRC47Q8N1G4 583 aaKnown RBP6.33□□□□□ -1.4
VPS13A-212ENST00000493341 GPBAR1Q8TDU6 330 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 PLPPR2Q96GM1 343 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 CCDC136Q96JN2 1154 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 SLC26A8Q96RN1 970 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 MYH16Q9H6N6 1097 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 GMIPQ9P107 970 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 REV1Q9UBZ9 1251 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 TCEAL9Q9UHQ7 104 aa6.33□□□□□ -1.4
VPS13A-212ENST00000493341 SLC35F4A4IF30 521 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 GFRA2O00451 464 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 PDE8AO60658 829 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 PLCG1P19174 1290 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 L1CAMP32004 1257 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 PCBP4P57723 403 aaKnown RBP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 GSTM4Q03013 218 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 SLC10A6Q3KNW5 377 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 AXDND1Q5T1B0 1012 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 FAM182BQ5T319 152 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 SCARA3Q6AZY7 606 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 THNSL2Q86YJ6 484 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 SLC7A3Q8WY07 619 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 ATG4CQ96DT6 458 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 ADAM19Q9H013 955 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 PHAXQ9H814 394 aaKnown RBP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 CAAP1Q9H8G2 361 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 THRAP3Q9Y2W1 955 aaKnown RBP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 PRR36Q9H6K5 1346 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 SOX1O00570 391 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 ADCY3O60266 1144 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 SUSD5O60279 629 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 PABPC4Q13310 644 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 BRDTQ58F21 947 aaPredicted RBP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 NLRC3Q7RTR2 1065 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 DDX42Q86XP3 938 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS13A-212ENST00000493341 KLHL3Q9UH77 587 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 PHF24Q9UPV7 400 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 EID1Q9Y6B2 187 aa6.32□□□□□ -1.4
VPS13A-212ENST00000493341 IQCA1LA6NCM1 817 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 SLC22A31A6NKX4 558 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 AVPP01185 164 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms