RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZBTB48P10074 688 aaPredicted RBP22.14■■□□□ 1.13
COL9A3-214ENST00000490398 REM2Q8IYK8 340 aaPredicted RBP22.14■■□□□ 1.13
COL9A3-214ENST00000490398 ZNF341Q9BYN7 854 aa22.14■■□□□ 1.13
COL9A3-214ENST00000490398 DCTPP1Q9H773 170 aa22.14■■□□□ 1.13
COL9A3-214ENST00000490398 IGF2BP3O00425 579 aaKnown RBP eCLIP22.13■■□□□ 1.13
COL9A3-214ENST00000490398 IDH1O75874 414 aaKnown RBP22.13■■□□□ 1.13
COL9A3-214ENST00000490398 DYNLL1P63167 89 aaKnown RBP22.13■■□□□ 1.13
COL9A3-214ENST00000490398 DCAF15Q66K64 600 aa22.13■■□□□ 1.13
COL9A3-214ENST00000490398 LRRCC1Q9C099 1032 aa22.13■■□□□ 1.13
COL9A3-214ENST00000490398 ZNF112Q9UJU3 913 aa22.13■■□□□ 1.13
COL9A3-214ENST00000490398 CYP7A1P22680 504 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 SREBF2Q12772 1141 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 IFFO2Q5TF58 517 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 ZSCAN29Q8IWY8 852 aaPredicted RBP22.12■■□□□ 1.13
COL9A3-214ENST00000490398 TEX11Q8IYF3 940 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 OTUD5Q96G74 571 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 PTPN18Q99952 460 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 CSADQ9Y600 493 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 MAST2Q6P0Q8 1798 aa22.12■■□□□ 1.13
COL9A3-214ENST00000490398 MANSC4A6NHS7 340 aaPredicted RBP22.11■■□□□ 1.13
COL9A3-214ENST00000490398 PPP4CP60510 307 aa22.11■■□□□ 1.13
COL9A3-214ENST00000490398 MAGEB6Q8N7X4 407 aa22.11■■□□□ 1.13
COL9A3-214ENST00000490398 HOOK2Q96ED9 719 aa22.11■■□□□ 1.13
COL9A3-214ENST00000490398 MS4A4AQ96JQ5 239 aa22.11■■□□□ 1.13
COL9A3-214ENST00000490398 DNAJC2Q99543 621 aaKnown RBP22.11■■□□□ 1.13
COL9A3-214ENST00000490398 SPDYE5A6NIY4 337 aa22.1■■□□□ 1.13
COL9A3-214ENST00000490398 FAM196BA6NMK8 535 aa22.1■■□□□ 1.13
COL9A3-214ENST00000490398 PHF20L1A8MW92 1017 aa22.1■■□□□ 1.13
COL9A3-214ENST00000490398 GOLIM4O00461 696 aa22.1■■□□□ 1.13
COL9A3-214ENST00000490398 IFNL1Q8IU54 200 aa22.1■■□□□ 1.13
COL9A3-214ENST00000490398 MIGA1Q8NAN2 632 aa22.1■■□□□ 1.13
COL9A3-214ENST00000490398 OSBPL5Q9H0X9 879 aaPredicted RBP22.1■■□□□ 1.13
COL9A3-214ENST00000490398 BOLA2Q9H3K6 86 aa22.1■■□□□ 1.13
COL9A3-214ENST00000490398 MAP3K10Q02779 954 aa22.09■■□□□ 1.13
COL9A3-214ENST00000490398 SLFNL1Q499Z3 407 aa22.09■■□□□ 1.13
COL9A3-214ENST00000490398 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.09■■□□□ 1.13
COL9A3-214ENST00000490398 BRI3BPQ8WY22 251 aa22.09■■□□□ 1.13
COL9A3-214ENST00000490398 CASP8AP2Q9UKL3 1982 aa22.08■■□□□ 1.13
COL9A3-214ENST00000490398 TESPA1A2RU30 521 aaPredicted RBP22.08■■□□□ 1.13
COL9A3-214ENST00000490398 NPM3O75607 178 aaKnown RBP22.08■■□□□ 1.13
COL9A3-214ENST00000490398 CHGBP05060 677 aa22.08■■□□□ 1.13
COL9A3-214ENST00000490398 MAPKAPK5Q8IW41 473 aa22.08■■□□□ 1.13
COL9A3-214ENST00000490398 TGFBRAP1Q8WUH2 860 aa22.08■■□□□ 1.13
COL9A3-214ENST00000490398 IRF6O14896 467 aa22.07■■□□□ 1.12
COL9A3-214ENST00000490398 BAG3O95817 575 aa22.07■■□□□ 1.12
COL9A3-214ENST00000490398 MAP4K4O95819 1239 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-214ENST00000490398 ATP5JP18859 108 aa22.07■■□□□ 1.12
COL9A3-214ENST00000490398 TSHZ3Q63HK5 1081 aa22.07■■□□□ 1.12
COL9A3-214ENST00000490398 ERO1BQ86YB8 467 aa22.07■■□□□ 1.12
COL9A3-214ENST00000490398 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-214ENST00000490398 MAP3K12Q12852 859 aa22.06■■□□□ 1.12
COL9A3-214ENST00000490398 RRP1BQ14684 758 aaKnown RBP22.06■■□□□ 1.12
COL9A3-214ENST00000490398 NOL10Q9BSC4 688 aaKnown RBP22.06■■□□□ 1.12
COL9A3-214ENST00000490398 AK9Q5TCS8 1911 aa22.06■■□□□ 1.12
COL9A3-214ENST00000490398 DOCK2Q92608 1830 aa22.06■■□□□ 1.12
COL9A3-214ENST00000490398 FLT1P17948 1338 aa22.06■■□□□ 1.12
COL9A3-214ENST00000490398 CCL15-CCL14A0A0B4J2E2 113 aa22.05■■□□□ 1.12
COL9A3-214ENST00000490398 PDE6AP16499 860 aa22.05■■□□□ 1.12
COL9A3-214ENST00000490398 INHBEP58166 350 aa22.05■■□□□ 1.12
COL9A3-214ENST00000490398 CCL15Q16663 113 aa22.05■■□□□ 1.12
COL9A3-214ENST00000490398 NOL9Q5SY16 702 aaKnown RBP22.05■■□□□ 1.12
COL9A3-214ENST00000490398 CCDC84Q86UT8 332 aaPredicted RBP22.05■■□□□ 1.12
COL9A3-214ENST00000490398 OTUD7AQ8TE49 926 aaPredicted RBP22.05■■□□□ 1.12
COL9A3-214ENST00000490398 LAMB1P07942 1786 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 TCRBV5S4A2TA0A5A2 114 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 CAPN15O75808 1086 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 PPIL2Q13356 520 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 SLC4A8Q2Y0W8 1093 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 FAM43AQ8N2R8 423 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 ZNF296Q8WUU4 475 aaPredicted RBP22.04■■□□□ 1.12
COL9A3-214ENST00000490398 HAUS7Q99871 368 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 RIOK1Q9BRS2 568 aaKnown RBP22.04■■□□□ 1.12
COL9A3-214ENST00000490398 CFHR5Q9BXR6 569 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 PAG1Q9NWQ8 432 aa22.04■■□□□ 1.12
COL9A3-214ENST00000490398 SAP30BPQ9UHR5 308 aaKnown RBP22.04■■□□□ 1.12
COL9A3-214ENST00000490398 COL2A1P02458 1487 aaPredicted RBP22.03■■□□□ 1.12
COL9A3-214ENST00000490398 GPR25O00155 361 aa22.03■■□□□ 1.12
COL9A3-214ENST00000490398 IGSF3O75054 1194 aa22.03■■□□□ 1.12
COL9A3-214ENST00000490398 SLC9C2Q5TAH2 1124 aa22.03■■□□□ 1.12
COL9A3-214ENST00000490398 EXOC6Q8TAG9 804 aa22.03■■□□□ 1.12
COL9A3-214ENST00000490398 PALD1Q9ULE6 856 aa22.03■■□□□ 1.12
COL9A3-214ENST00000490398 ZNF532Q9HCE3 1301 aa22.03■■□□□ 1.12
COL9A3-214ENST00000490398 PLCG2P16885 1265 aa22.02■■□□□ 1.12
COL9A3-214ENST00000490398 GTF2A2P52657 109 aa22.02■■□□□ 1.12
COL9A3-214ENST00000490398 PPATQ06203 517 aa22.02■■□□□ 1.12
COL9A3-214ENST00000490398 TTF1Q15361 905 aaPredicted RBP22.02■■□□□ 1.12
COL9A3-214ENST00000490398 SCYL3Q8IZE3 742 aa22.02■■□□□ 1.12
COL9A3-214ENST00000490398 MCOLN1Q9GZU1 580 aa22.02■■□□□ 1.12
COL9A3-214ENST00000490398 DNAJC18Q9H819 358 aa22.02■■□□□ 1.12
COL9A3-214ENST00000490398 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.02■■□□□ 1.12
COL9A3-214ENST00000490398 SUPT16HQ9Y5B9 1047 aaKnown RBP22.02■■□□□ 1.12
COL9A3-214ENST00000490398 SIPA1L1O43166 1804 aa22.01■■□□□ 1.11
COL9A3-214ENST00000490398 TBC1D12O60347 775 aa22.01■■□□□ 1.11
COL9A3-214ENST00000490398 JAG1P78504 1218 aa22.01■■□□□ 1.11
COL9A3-214ENST00000490398 CRHR2Q13324 411 aa22.01■■□□□ 1.11
COL9A3-214ENST00000490398 MOGSQ13724 837 aa22.01■■□□□ 1.11
COL9A3-214ENST00000490398 ECHDC1Q9NTX5 307 aa22.01■■□□□ 1.11
COL9A3-214ENST00000490398 CDK5RAP2Q96SN8 1893 aa22■■□□□ 1.11
COL9A3-214ENST00000490398 BTBD19C9JJ37 291 aa22■■□□□ 1.11
COL9A3-214ENST00000490398 ALDH1A1P00352 501 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms