RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 ZNF384Q8TF68 577 aa13.8□□□□□ -0.2
TRIM40-208ENST00000489892 SLKQ9H2G2 1235 aaPredicted RBP13.8□□□□□ -0.2
TRIM40-208ENST00000489892 ZNF287Q9HBT7 754 aa13.8□□□□□ -0.2
TRIM40-208ENST00000489892 PDRG1Q9NUG6 133 aa13.8□□□□□ -0.2
TRIM40-208ENST00000489892 SERPINA10Q9UK55 444 aa13.8□□□□□ -0.2
TRIM40-208ENST00000489892 ISY1Q9ULR0 285 aaKnown RBP13.8□□□□□ -0.2
TRIM40-208ENST00000489892 FOXP2O15409 715 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 RPS6KB1P23443 525 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 RPS12P25398 132 aaKnown RBP13.79□□□□□ -0.2
TRIM40-208ENST00000489892 BTDP43251 543 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 DIXDC1Q155Q3 683 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 DPY19L2Q6NUT2 758 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 RSBN1LQ6PCB5 846 aaPredicted RBP13.79□□□□□ -0.2
TRIM40-208ENST00000489892 DHX32Q7L7V1 743 aaKnown RBP13.79□□□□□ -0.2
TRIM40-208ENST00000489892 ABHD8Q96I13 439 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 ZDHHC15Q96MV8 337 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 KRT23Q9C075 422 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 ANAPC4Q9UJX5 808 aa13.79□□□□□ -0.2
TRIM40-208ENST00000489892 E7EWF7 191 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 NFKBIEO00221 500 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 VIL1P09327 827 aaKnown RBP13.78□□□□□ -0.2
TRIM40-208ENST00000489892 MCM5P33992 734 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 EIF6P56537 245 aaKnown RBP13.78□□□□□ -0.2
TRIM40-208ENST00000489892 FGD1P98174 961 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 SBK1Q52WX2 424 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 CIAPIN1Q6FI81 312 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 MFSD6Q6ZSS7 791 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 TEX11Q8IYF3 940 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 CERS5Q8N5B7 392 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 ZSCAN31Q96LW9 406 aaPredicted RBP13.78□□□□□ -0.2
TRIM40-208ENST00000489892 MTA3Q9BTC8 594 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 UPF3BQ9BZI7 483 aaKnown RBP13.78□□□□□ -0.2
TRIM40-208ENST00000489892 EPB41L4AQ9HCS5 686 aaPredicted RBP13.78□□□□□ -0.2
TRIM40-208ENST00000489892 PRDM10Q9NQV6 1147 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 SH2B1Q9NRF2 756 aaPredicted RBP13.78□□□□□ -0.2
TRIM40-208ENST00000489892 DAGLAQ9Y4D2 1042 aa13.78□□□□□ -0.2
TRIM40-208ENST00000489892 FOXN1O15353 648 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 NPM3O75607 178 aaKnown RBP13.77□□□□□ -0.21
TRIM40-208ENST00000489892 CRKP46108 304 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 DYNLL1P63167 89 aaKnown RBP13.77□□□□□ -0.21
TRIM40-208ENST00000489892 PDE4BQ07343 736 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 PPARAQ07869 468 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 SART3Q15020 963 aaKnown RBP13.77□□□□□ -0.21
TRIM40-208ENST00000489892 SCN9AQ15858 1988 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 AKNAD1Q5T1N1 836 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 KIAA0825Q8IV33 1275 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 STAG1Q8WVM7 1258 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 GBP4Q96PP9 640 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 DCP1AQ9NPI6 582 aaPredicted RBP13.77□□□□□ -0.21
TRIM40-208ENST00000489892 TMOD2Q9NZR1 351 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 LIMCH1Q9UPQ0 1083 aa13.77□□□□□ -0.21
TRIM40-208ENST00000489892 YDJCA8MPS7 323 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 F8W031 263 aaPredicted RBP13.76□□□□□ -0.21
TRIM40-208ENST00000489892 PRKAB2O43741 272 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 MCM4P33991 863 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 DDIT3P35638 169 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 HAND2P61296 217 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 ADCK5Q3MIX3 580 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 FBXL16Q8N461 479 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 SH3RF3Q8TEJ3 882 aaPredicted RBP13.76□□□□□ -0.21
TRIM40-208ENST00000489892 SDR42E1Q8WUS8 393 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 TTC14Q96N46 770 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 MCM9Q9NXL9 1143 aa13.76□□□□□ -0.21
TRIM40-208ENST00000489892 USP17L8P0C7I0 530 aa13.75□□□□□ -0.21
TRIM40-208ENST00000489892 RBM5P52756 815 aaKnown RBP eCLIP13.75□□□□□ -0.21
TRIM40-208ENST00000489892 GRIK5Q16478 980 aa13.75□□□□□ -0.21
TRIM40-208ENST00000489892 TTC6Q86TZ1 520 aa13.75□□□□□ -0.21
TRIM40-208ENST00000489892 ESR2Q92731 530 aa13.75□□□□□ -0.21
TRIM40-208ENST00000489892 ROBO3Q96MS0 1386 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 ERICH2A1L162 156 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 MINDY4BA8MYZ0 360 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 USP17L12C9JPN9 530 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 USP17L21D6R901 530 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 PSMD14O00487 310 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 MYO1BO43795 1136 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 RAD17O75943 681 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 POLR3DP05423 398 aaPredicted RBP13.74□□□□□ -0.21
TRIM40-208ENST00000489892 SCNN1DP51172 638 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 RHBDL3P58872 404 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 CCDC178Q5BJE1 867 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 TGFBRAP1Q8WUH2 860 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 INTS4Q96HW7 963 aaKnown RBP13.74□□□□□ -0.21
TRIM40-208ENST00000489892 TMEM87BQ96K49 555 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 NAV1Q8NEY1 1877 aa13.74□□□□□ -0.21
TRIM40-208ENST00000489892 LAMB1P07942 1786 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 FLT1P17948 1338 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 FZD9O00144 591 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 ORC4O43929 436 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 HLA-DOAP06340 250 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 PDIA4P13667 645 aaKnown RBP13.73□□□□□ -0.21
TRIM40-208ENST00000489892 AK2P54819 239 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 CXCL9Q07325 125 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 DLGAP5Q15398 846 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 SKOR2Q2VWA4 1001 aaPredicted RBP13.73□□□□□ -0.21
TRIM40-208ENST00000489892 CTR9Q6PD62 1173 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 TBC1D10CQ8IV04 446 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 TMTC2Q8N394 836 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 MTMR14Q8NCE2 650 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 DPF2Q92785 391 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 GMLQ99445 158 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms