RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 VPS37DQ86XT2 251 aa14.74□□□□□ -0.05
HDAC6-233ENST00000489352 TDRD7Q8NHU6 1098 aaKnown RBP14.74□□□□□ -0.05
HDAC6-233ENST00000489352 FAM151AQ8WW52 585 aa14.74□□□□□ -0.05
HDAC6-233ENST00000489352 RNPC3Q96LT9 517 aaKnown RBP14.74□□□□□ -0.05
HDAC6-233ENST00000489352 GJD2Q9UKL4 321 aa14.74□□□□□ -0.05
HDAC6-233ENST00000489352 ATP11BQ9Y2G3 1177 aa14.74□□□□□ -0.05
HDAC6-233ENST00000489352 GCLCP48506 637 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-233ENST00000489352 MAP3K21Q5TCX8 1036 aa14.73□□□□□ -0.05
HDAC6-233ENST00000489352 TBC1D22AQ8WUA7 517 aa14.73□□□□□ -0.05
HDAC6-233ENST00000489352 BADQ92934 168 aa14.73□□□□□ -0.05
HDAC6-233ENST00000489352 ZDHHC15Q96MV8 337 aa14.73□□□□□ -0.05
HDAC6-233ENST00000489352 ZNF576Q9H609 170 aa14.73□□□□□ -0.05
HDAC6-233ENST00000489352 CHMP3Q9Y3E7 222 aa14.73□□□□□ -0.05
HDAC6-233ENST00000489352 FRMPD3Q5JV73 1810 aa14.73□□□□□ -0.05
HDAC6-233ENST00000489352 PLXNB2O15031 1838 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 IGKV5-2P06315 115 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 ZKSCAN1P17029 563 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-233ENST00000489352 RTP1P59025 263 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 CACNB2Q08289 660 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-233ENST00000489352 TCP10Q12799 353 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 CHAF1AQ13111 956 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-233ENST00000489352 IFIT5Q13325 482 aaKnown RBP14.72□□□□□ -0.05
HDAC6-233ENST00000489352 CCDC85BQ15834 202 aaPredicted RBP14.72□□□□□ -0.05
HDAC6-233ENST00000489352 CWF19L2Q2TBE0 894 aaKnown RBP14.72□□□□□ -0.05
HDAC6-233ENST00000489352 TAF7LQ5H9L4 462 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 P2RX7Q99572 595 aaKnown RBP14.72□□□□□ -0.05
HDAC6-233ENST00000489352 NUDT12Q9BQG2 462 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 CHMP4AQ9BY43 222 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 AGTPBP1Q9UPW5 1226 aa14.72□□□□□ -0.05
HDAC6-233ENST00000489352 MAST3O60307 1309 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 TRIM75PA6NK02 468 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 H7C1W4 665 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 DNAJB2P25686 324 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 GYG1P46976 350 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 AKNAD1Q5T1N1 836 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 LHX8Q68G74 356 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 KSR2Q6VAB6 950 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 CCAR1Q8IX12 1150 aaKnown RBP14.71□□□□□ -0.05
HDAC6-233ENST00000489352 SCYL3Q8IZE3 742 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 AFG3L2Q9Y4W6 797 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 CACNA1AO00555 2505 aa14.71□□□□□ -0.05
HDAC6-233ENST00000489352 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-233ENST00000489352 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-233ENST00000489352 PI4KAP2A4QPH2 592 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 ELL2O00472 640 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-233ENST00000489352 CSF1RP07333 972 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 PTPRAP18433 802 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 CCND3P30281 292 aaPredicted RBP14.7□□□□□ -0.06
HDAC6-233ENST00000489352 PABPC4Q13310 644 aaKnown RBP eCLIP14.7□□□□□ -0.06
HDAC6-233ENST00000489352 POTEEQ6S8J3 1075 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 PI4KAP1Q8N8J0 262 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 MRIQ9BWK5 157 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 PLA2G12BQ9BX93 195 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 CNNM1Q9NRU3 951 aa14.7□□□□□ -0.06
HDAC6-233ENST00000489352 LRRFIP2Q9Y608 721 aaKnown RBP14.7□□□□□ -0.06
HDAC6-233ENST00000489352 NEURL1BA8MQ27 555 aa14.69□□□□□ -0.06
HDAC6-233ENST00000489352 XRCC5P13010 732 aaKnown RBP14.69□□□□□ -0.06
HDAC6-233ENST00000489352 AAK1Q2M2I8 961 aa14.69□□□□□ -0.06
HDAC6-233ENST00000489352 LDHAL6AQ6ZMR3 332 aa14.69□□□□□ -0.06
HDAC6-233ENST00000489352 SOCS4Q8WXH5 440 aa14.69□□□□□ -0.06
HDAC6-233ENST00000489352 NECAB3Q96P71 396 aaPredicted RBP14.69□□□□□ -0.06
HDAC6-233ENST00000489352 IGFBP4P22692 258 aa14.68□□□□□ -0.06
HDAC6-233ENST00000489352 MRE11P49959 708 aa14.68□□□□□ -0.06
HDAC6-233ENST00000489352 GRIK5Q16478 980 aa14.68□□□□□ -0.06
HDAC6-233ENST00000489352 APOBEC3HQ6NTF7 200 aaKnown RBP14.68□□□□□ -0.06
HDAC6-233ENST00000489352 TIFAQ96CG3 184 aa14.68□□□□□ -0.06
HDAC6-233ENST00000489352 EPHX3Q9H6B9 360 aa14.68□□□□□ -0.06
HDAC6-233ENST00000489352 IQSEC3Q9UPP2 1182 aaPredicted RBP14.68□□□□□ -0.06
HDAC6-233ENST00000489352 CLSPNQ9HAW4 1339 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 PHIPQ8WWQ0 1821 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 DOCK2Q92608 1830 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 CNGA1P29973 690 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 UBE4AQ14139 1066 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 TREML2Q5T2D2 321 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 CCDC30Q5VVM6 783 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 FAM84BQ96KN1 310 aaPredicted RBP14.67□□□□□ -0.06
HDAC6-233ENST00000489352 CWC22Q9HCG8 908 aaKnown RBP14.67□□□□□ -0.06
HDAC6-233ENST00000489352 DOCK1Q14185 1865 aa14.67□□□□□ -0.06
HDAC6-233ENST00000489352 PLXNA1Q9UIW2 1896 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 DNM1LO00429 736 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 RGS2P41220 211 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 GCKRQ14397 625 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 CCDC57Q2TAC2 916 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 HHIPL2Q6UWX4 724 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 PROCA1Q8NCQ7 364 aaPredicted RBP14.66□□□□□ -0.06
HDAC6-233ENST00000489352 PRDM12Q9H4Q4 367 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 MYH16Q9H6N6 1097 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 RLFQ13129 1914 aa14.66□□□□□ -0.06
HDAC6-233ENST00000489352 MSCO60682 206 aa14.65□□□□□ -0.06
HDAC6-233ENST00000489352 CAVIN4Q5BKX8 364 aa14.65□□□□□ -0.06
HDAC6-233ENST00000489352 SLC39A5Q6ZMH5 540 aa14.65□□□□□ -0.06
HDAC6-233ENST00000489352 CCDC129Q6ZRS4 1044 aa14.65□□□□□ -0.06
HDAC6-233ENST00000489352 ZSCAN29Q8IWY8 852 aaPredicted RBP14.65□□□□□ -0.06
HDAC6-233ENST00000489352 BMP1P13497 986 aa14.64□□□□□ -0.07
HDAC6-233ENST00000489352 TRIM26Q12899 539 aaPredicted RBP14.64□□□□□ -0.07
HDAC6-233ENST00000489352 MFSD14CQ5VZR4 134 aa14.64□□□□□ -0.07
HDAC6-233ENST00000489352 LPAR1Q92633 364 aa14.64□□□□□ -0.07
HDAC6-233ENST00000489352 MBIPQ9NS73 344 aa14.64□□□□□ -0.07
HDAC6-233ENST00000489352 CXXC1Q9P0U4 656 aaPredicted RBP14.64□□□□□ -0.07
HDAC6-233ENST00000489352 SUGT1Q9Y2Z0 365 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms