RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 SAMD7Q7Z3H4 446 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 MAGEB6Q8N7X4 407 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 NSUN4Q96CB9 384 aaKnown RBP12.44□□□□□ -0.42
SKA1-204ENST00000488454 TAF1DQ9H5J8 278 aaPredicted RBP12.44□□□□□ -0.42
SKA1-204ENST00000488454 SHTN1A0MZ66 631 aa12.43□□□□□ -0.42
SKA1-204ENST00000488454 BAG3O95817 575 aa12.43□□□□□ -0.42
SKA1-204ENST00000488454 ZFYP08048 801 aaPredicted RBP12.43□□□□□ -0.42
SKA1-204ENST00000488454 NUDT7P0C024 238 aa12.43□□□□□ -0.42
SKA1-204ENST00000488454 DIXDC1Q155Q3 683 aa12.43□□□□□ -0.42
SKA1-204ENST00000488454 EAPPQ56P03 285 aaPredicted RBP12.43□□□□□ -0.42
SKA1-204ENST00000488454 OXER1Q8TDS5 423 aa12.43□□□□□ -0.42
SKA1-204ENST00000488454 ZDHHC15Q96MV8 337 aa12.43□□□□□ -0.42
SKA1-204ENST00000488454 TIAM2Q8IVF5 1701 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 SCN9AQ15858 1988 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 POTEB3A0JP26 581 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 POTEBQ6S5H4 581 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 SKAP1Q86WV1 359 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 TICAM2Q86XR7 235 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 MTMR14Q8NCE2 650 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 NMRK2Q9NPI5 230 aa12.42□□□□□ -0.42
SKA1-204ENST00000488454 ZNF532Q9HCE3 1301 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 POTECB2RU33 542 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 HIP1O00291 1037 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 RNF113AO15541 343 aaKnown RBP12.41□□□□□ -0.42
SKA1-204ENST00000488454 PDE6AP16499 860 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 SDSP20132 328 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 ADD2P35612 726 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 UBE3CQ15386 1083 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 CERS3Q8IU89 383 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 TRPM4Q8TD43 1214 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 PRMT6Q96LA8 375 aaPredicted RBP12.41□□□□□ -0.42
SKA1-204ENST00000488454 HS3ST6Q96QI5 342 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 USP40Q9NVE5 1235 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 TMOD2Q9NZR1 351 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 DAGLAQ9Y4D2 1042 aa12.41□□□□□ -0.42
SKA1-204ENST00000488454 MROH7-TTC4A0A0A0MT08 1334 aa12.4□□□□□ -0.42
SKA1-204ENST00000488454 GPR75-ASB3A0A0A6YYF3 556 aa12.4□□□□□ -0.42
SKA1-204ENST00000488454 WNT10BO00744 389 aa12.4□□□□□ -0.42
SKA1-204ENST00000488454 GSPT1P15170 499 aaKnown RBP12.4□□□□□ -0.42
SKA1-204ENST00000488454 BTDP43251 543 aa12.4□□□□□ -0.42
SKA1-204ENST00000488454 NBPF9Q3BBW0 867 aa12.4□□□□□ -0.42
SKA1-204ENST00000488454 BMP2KLQ5H9B9 411 aa12.4□□□□□ -0.42
SKA1-204ENST00000488454 ZNF784Q8NCA9 323 aaPredicted RBP12.4□□□□□ -0.42
SKA1-204ENST00000488454 ZC3H15Q8WU90 426 aaKnown RBP12.4□□□□□ -0.42
SKA1-204ENST00000488454 DCPSQ96C86 337 aaKnown RBP12.4□□□□□ -0.42
SKA1-204ENST00000488454 TDRD3Q9H7E2 651 aaKnown RBP12.4□□□□□ -0.42
SKA1-204ENST00000488454 DIAPH3Q9NSV4 1193 aa12.4□□□□□ -0.42
SKA1-204ENST00000488454 GAKO14976 1311 aa12.39□□□□□ -0.43
SKA1-204ENST00000488454 MAGEB6P1A0A0J9YX57 407 aa12.39□□□□□ -0.43
SKA1-204ENST00000488454 TBC1D12O60347 775 aa12.39□□□□□ -0.43
SKA1-204ENST00000488454 EGFRP00533 1210 aa12.39□□□□□ -0.43
SKA1-204ENST00000488454 HIRAP54198 1017 aaPredicted RBP12.39□□□□□ -0.43
SKA1-204ENST00000488454 APOBEC3HQ6NTF7 200 aaKnown RBP12.39□□□□□ -0.43
SKA1-204ENST00000488454 MIGA1Q8NAN2 632 aa12.39□□□□□ -0.43
SKA1-204ENST00000488454 APPBP2Q92624 585 aa12.39□□□□□ -0.43
SKA1-204ENST00000488454 VEZTQ9HBM0 779 aa12.39□□□□□ -0.43
SKA1-204ENST00000488454 AATFQ9NY61 560 aaKnown RBP eCLIP12.39□□□□□ -0.43
SKA1-204ENST00000488454 TCRBV5S4A2TA0A5A2 114 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 CLRN2A0PK11 232 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 PPP4CP60510 307 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 CDC42EP5Q6NZY7 148 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 CASC1Q6TDU7 716 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 LDHDQ86WU2 507 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 ZNF384Q8TF68 577 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 AIDAQ96BJ3 306 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 ZBED3Q96IU2 234 aaPredicted RBP12.38□□□□□ -0.43
SKA1-204ENST00000488454 EMILIN3Q9NT22 766 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 ZNF70Q9UC06 446 aaPredicted RBP12.38□□□□□ -0.43
SKA1-204ENST00000488454 PCDHAC2Q9Y5I4 1007 aa12.38□□□□□ -0.43
SKA1-204ENST00000488454 AKAP11Q9UKA4 1901 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 TNNI2P48788 182 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 CAMK2BQ13554 666 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 TNFAIP1Q13829 316 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 VARS2Q5ST30 1063 aaKnown RBP12.37□□□□□ -0.43
SKA1-204ENST00000488454 IFFO2Q5TF58 517 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 ANGEL2Q5VTE6 544 aaKnown RBP12.37□□□□□ -0.43
SKA1-204ENST00000488454 ADGRA1Q86SQ6 560 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 APOBEC3FQ8IUX4 373 aaKnown RBP12.37□□□□□ -0.43
SKA1-204ENST00000488454 SULF1Q8IWU6 871 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 CDAN1Q8IWY9 1227 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 TEX11Q8IYF3 940 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 RUFY2Q8WXA3 655 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 HELLSQ9NRZ9 838 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 GGA3Q9NZ52 723 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 MYH13Q9UKX3 1938 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 WDR90Q96KV7 1748 aa12.37□□□□□ -0.43
SKA1-204ENST00000488454 RFX7Q2KHR2 1363 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 MBD4O95243 580 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 USP5P45974 858 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 MFAP1P55081 439 aaKnown RBP12.36□□□□□ -0.43
SKA1-204ENST00000488454 DYNLL1P63167 89 aaKnown RBP12.36□□□□□ -0.43
SKA1-204ENST00000488454 SLFNL1Q499Z3 407 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 MCMDC2Q4G0Z9 681 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 ZMYM1Q5SVZ6 1142 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 CWC27Q6UX04 472 aaKnown RBP12.36□□□□□ -0.43
SKA1-204ENST00000488454 CDC37L1Q7L3B6 337 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 SH3RF3Q8TEJ3 882 aaPredicted RBP12.36□□□□□ -0.43
SKA1-204ENST00000488454 OSBP2Q969R2 916 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 DDRGK1Q96HY6 314 aa12.36□□□□□ -0.43
SKA1-204ENST00000488454 CRNKL1Q9BZJ0 848 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms