RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 MANSC4A6NHS7 340 aaPredicted RBP18.23■□□□□ 0.51
TRIM54-204ENST00000488321 GOLIM4O00461 696 aa18.23■□□□□ 0.51
TRIM54-204ENST00000488321 IGSF3O75054 1194 aa18.23■□□□□ 0.51
TRIM54-204ENST00000488321 MAP4K4O95819 1239 aaPredicted RBP18.23■□□□□ 0.51
TRIM54-204ENST00000488321 TTF1Q15361 905 aaPredicted RBP18.23■□□□□ 0.51
TRIM54-204ENST00000488321 ADGRA1Q86SQ6 560 aa18.23■□□□□ 0.51
TRIM54-204ENST00000488321 MAGEB6Q8N7X4 407 aa18.23■□□□□ 0.51
TRIM54-204ENST00000488321 DDTLA6NHG4 134 aaPredicted RBP18.22■□□□□ 0.51
TRIM54-204ENST00000488321 PLCG2P16885 1265 aa18.22■□□□□ 0.51
TRIM54-204ENST00000488321 GJA5P36382 358 aa18.22■□□□□ 0.51
TRIM54-204ENST00000488321 TM4SF4P48230 202 aa18.22■□□□□ 0.51
TRIM54-204ENST00000488321 SH3BP5LQ7L8J4 393 aa18.22■□□□□ 0.51
TRIM54-204ENST00000488321 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.22■□□□□ 0.51
TRIM54-204ENST00000488321 CNKSR2Q8WXI2 1034 aa18.22■□□□□ 0.51
TRIM54-204ENST00000488321 OTUD5Q96G74 571 aa18.22■□□□□ 0.51
TRIM54-204ENST00000488321 BOLA2Q9H3K6 86 aa18.22■□□□□ 0.51
TRIM54-204ENST00000488321 INPP5BP32019 993 aa18.21■□□□□ 0.51
TRIM54-204ENST00000488321 MIGA1Q8NAN2 632 aa18.21■□□□□ 0.51
TRIM54-204ENST00000488321 SNCAIPQ9Y6H5 919 aa18.21■□□□□ 0.51
TRIM54-204ENST00000488321 ATP5JP18859 108 aa18.2■□□□□ 0.5
TRIM54-204ENST00000488321 INHBEP58166 350 aa18.2■□□□□ 0.5
TRIM54-204ENST00000488321 PPP4CP60510 307 aa18.2■□□□□ 0.5
TRIM54-204ENST00000488321 DYNLL1P63167 89 aaKnown RBP18.2■□□□□ 0.5
TRIM54-204ENST00000488321 EDC3Q96F86 508 aaKnown RBP18.2■□□□□ 0.5
TRIM54-204ENST00000488321 OSBPL5Q9H0X9 879 aaPredicted RBP18.2■□□□□ 0.5
TRIM54-204ENST00000488321 SPDYE5A6NIY4 337 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 NPM3O75607 178 aaKnown RBP18.19■□□□□ 0.5
TRIM54-204ENST00000488321 TBC1D8O95759 1140 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 SLC9C2Q5TAH2 1124 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 ERO1BQ86YB8 467 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 MAPKAPK5Q8IW41 473 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 TGFBRAP1Q8WUH2 860 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 GPATCH3Q96I76 525 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 PAG1Q9NWQ8 432 aa18.19■□□□□ 0.5
TRIM54-204ENST00000488321 SUPT16HQ9Y5B9 1047 aaKnown RBP18.19■□□□□ 0.5
TRIM54-204ENST00000488321 SLURP2P0DP57 97 aa18.18■□□□□ 0.5
TRIM54-204ENST00000488321 IFNL1Q8IU54 200 aa18.18■□□□□ 0.5
TRIM54-204ENST00000488321 ECHDC1Q9NTX5 307 aa18.18■□□□□ 0.5
TRIM54-204ENST00000488321 ZBTB47Q9UFB7 747 aaPredicted RBP18.18■□□□□ 0.5
TRIM54-204ENST00000488321 ZNF112Q9UJU3 913 aa18.18■□□□□ 0.5
TRIM54-204ENST00000488321 ATRNL1Q5VV63 1379 aa18.17■□□□□ 0.5
TRIM54-204ENST00000488321 ALDH1A1P00352 501 aa18.17■□□□□ 0.5
TRIM54-204ENST00000488321 PDE6AP16499 860 aa18.17■□□□□ 0.5
TRIM54-204ENST00000488321 GTF2A2P52657 109 aa18.17■□□□□ 0.5
TRIM54-204ENST00000488321 OTUD7BQ6GQQ9 843 aa18.17■□□□□ 0.5
TRIM54-204ENST00000488321 TMED8Q6PL24 325 aaPredicted RBP18.17■□□□□ 0.5
TRIM54-204ENST00000488321 HAUS7Q99871 368 aa18.17■□□□□ 0.5
TRIM54-204ENST00000488321 CCL15-CCL14A0A0B4J2E2 113 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 FAM196BA6NMK8 535 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 IGF2BP3O00425 579 aaKnown RBP eCLIP18.16■□□□□ 0.5
TRIM54-204ENST00000488321 USP5P45974 858 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 CCL15Q16663 113 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 TSHZ3Q63HK5 1081 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 CERS3Q8IU89 383 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 EXOC6Q8TAG9 804 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.16■□□□□ 0.5
TRIM54-204ENST00000488321 SAP30BPQ9UHR5 308 aaKnown RBP18.16■□□□□ 0.5
TRIM54-204ENST00000488321 FLT1P17948 1338 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 ZNF532Q9HCE3 1301 aa18.16■□□□□ 0.5
TRIM54-204ENST00000488321 MYH2Q9UKX2 1941 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 MAGEB6P1A0A0J9YX57 407 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 PHF20L1A8MW92 1017 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 IRF6O14896 467 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 PPATQ06203 517 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 PPIL2Q13356 520 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 AAMPQ13685 434 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 NOL9Q5SY16 702 aaKnown RBP18.15■□□□□ 0.5
TRIM54-204ENST00000488321 SCYL3Q8IZE3 742 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 MS4A4AQ96JQ5 239 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.15■□□□□ 0.5
TRIM54-204ENST00000488321 DHX36Q9H2U1 1008 aaKnown RBP18.15■□□□□ 0.5
TRIM54-204ENST00000488321 PICK1Q9NRD5 415 aa18.15■□□□□ 0.5
TRIM54-204ENST00000488321 MAP3K10Q02779 954 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 SNAPC2Q13487 334 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 SLC4A8Q2Y0W8 1093 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 ANKRD45Q5TZF3 282 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 BRI3BPQ8WY22 251 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 PTPN18Q99952 460 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 TRIM34Q9BYJ4 488 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 PI4KBQ9UBF8 816 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 PALD1Q9ULE6 856 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 MAST2Q6P0Q8 1798 aa18.14■□□□□ 0.49
TRIM54-204ENST00000488321 TESPA1A2RU30 521 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-204ENST00000488321 TBC1D12O60347 775 aa18.13■□□□□ 0.49
TRIM54-204ENST00000488321 CETPP11597 493 aa18.13■□□□□ 0.49
TRIM54-204ENST00000488321 HDAC1Q13547 482 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-204ENST00000488321 IFFO2Q5TF58 517 aa18.13■□□□□ 0.49
TRIM54-204ENST00000488321 CRACR2BQ8N4Y2 399 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-204ENST00000488321 GCC1Q96CN9 775 aa18.13■□□□□ 0.49
TRIM54-204ENST00000488321 RIOK1Q9BRS2 568 aaKnown RBP18.13■□□□□ 0.49
TRIM54-204ENST00000488321 AKAP11Q9UKA4 1901 aa18.13■□□□□ 0.49
TRIM54-204ENST00000488321 COL2A1P02458 1487 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-204ENST00000488321 GPR25O00155 361 aa18.12■□□□□ 0.49
TRIM54-204ENST00000488321 CTNND1O60716 968 aaKnown RBP18.12■□□□□ 0.49
TRIM54-204ENST00000488321 HLA-DOAP06340 250 aa18.12■□□□□ 0.49
TRIM54-204ENST00000488321 ZNF296Q8WUU4 475 aaPredicted RBP18.12■□□□□ 0.49
TRIM54-204ENST00000488321 R3HDMLQ9H3Y0 253 aa18.12■□□□□ 0.49
TRIM54-204ENST00000488321 HERC5Q9UII4 1024 aaKnown RBP18.12■□□□□ 0.49
TRIM54-204ENST00000488321 ZHX2Q9Y6X8 837 aa18.12■□□□□ 0.49
TRIM54-204ENST00000488321 TCRBV5S4A2TA0A5A2 114 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms