RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 AKAP4Q5JQC9 854 aa8.8□□□□□ -1
USP48-209ENST00000487880 GPAT2Q6NUI2 795 aa8.8□□□□□ -1
USP48-209ENST00000487880 GOLM1Q8NBJ4 401 aa8.8□□□□□ -1
USP48-209ENST00000487880 ZNF296Q8WUU4 475 aaPredicted RBP8.8□□□□□ -1
USP48-209ENST00000487880 GATAD2BQ8WXI9 593 aa8.8□□□□□ -1
USP48-209ENST00000487880 PCDHA4Q9UN74 947 aa8.8□□□□□ -1
USP48-209ENST00000487880 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.8□□□□□ -1
USP48-209ENST00000487880 CILPO75339 1184 aa8.79□□□□□ -1
USP48-209ENST00000487880 ERCC5P28715 1186 aaPredicted RBP8.79□□□□□ -1
USP48-209ENST00000487880 ERVK-24P63145 666 aa8.79□□□□□ -1
USP48-209ENST00000487880 RING1Q06587 406 aa8.79□□□□□ -1
USP48-209ENST00000487880 SNAP47Q5SQN1 464 aa8.79□□□□□ -1
USP48-209ENST00000487880 FAM196AQ6ZSG2 479 aa8.79□□□□□ -1
USP48-209ENST00000487880 C12orf50Q8NA57 414 aaPredicted RBP8.79□□□□□ -1
USP48-209ENST00000487880 LRRC3Q9BY71 257 aa8.79□□□□□ -1
USP48-209ENST00000487880 SUPT16HQ9Y5B9 1047 aaKnown RBP8.79□□□□□ -1
USP48-209ENST00000487880 IGHA1P01876 353 aa8.78□□□□□ -1
USP48-209ENST00000487880 GATA4P43694 442 aa8.78□□□□□ -1
USP48-209ENST00000487880 CDK8P49336 464 aa8.78□□□□□ -1
USP48-209ENST00000487880 INPP5AQ14642 412 aa8.78□□□□□ -1
USP48-209ENST00000487880 LRFN4Q6PJG9 635 aa8.78□□□□□ -1
USP48-209ENST00000487880 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.78□□□□□ -1
USP48-209ENST00000487880 KIAA0825Q8IV33 1275 aa8.78□□□□□ -1
USP48-209ENST00000487880 SPON2Q9BUD6 331 aa8.78□□□□□ -1
USP48-209ENST00000487880 ACTL7BQ9Y614 415 aa8.78□□□□□ -1
USP48-209ENST00000487880 ROBO2Q9HCK4 1378 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 GFRA2O00451 464 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 PROCP04070 461 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 RPL6Q02878 288 aaKnown RBP8.77□□□□□ -1.01
USP48-209ENST00000487880 CYFIP1Q7L576 1253 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 ARMC10Q8N2F6 343 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 JARID2Q92833 1246 aaPredicted RBP8.77□□□□□ -1.01
USP48-209ENST00000487880 PLPPR2Q96GM1 343 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 MYRFLQ96LU7 910 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 NT5C1AQ9BXI3 368 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 DISC1Q9NRI5 854 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 AP4E1Q9UPM8 1137 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 SNCAIPQ9Y6H5 919 aa8.77□□□□□ -1.01
USP48-209ENST00000487880 NTF4P34130 210 aa8.76□□□□□ -1.01
USP48-209ENST00000487880 CRKP46108 304 aa8.76□□□□□ -1.01
USP48-209ENST00000487880 WIPI1Q5MNZ9 446 aaPredicted RBP8.76□□□□□ -1.01
USP48-209ENST00000487880 EAF1Q96JC9 268 aaPredicted RBP8.76□□□□□ -1.01
USP48-209ENST00000487880 FANCD2OSQ96PS1 177 aa8.76□□□□□ -1.01
USP48-209ENST00000487880 ATXN3LQ9H3M9 355 aa8.76□□□□□ -1.01
USP48-209ENST00000487880 ACBD3Q9H3P7 528 aa8.76□□□□□ -1.01
USP48-209ENST00000487880 MPP2Q14168 576 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 HDXQ7Z353 690 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 FBXO27Q8NI29 283 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 CCSER2Q9H7U1 834 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 FAM105AQ9NUU6 356 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 UBP1Q9NZI7 540 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 HIF3AQ9Y2N7 669 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 TACC3Q9Y6A5 838 aa8.75□□□□□ -1.01
USP48-209ENST00000487880 DCDC2CA8MYV0 355 aa8.74□□□□□ -1.01
USP48-209ENST00000487880 SART1O43290 800 aaKnown RBP8.74□□□□□ -1.01
USP48-209ENST00000487880 GJA8P48165 433 aa8.74□□□□□ -1.01
USP48-209ENST00000487880 PAK2Q13177 524 aa8.74□□□□□ -1.01
USP48-209ENST00000487880 DYMQ7RTS9 669 aa8.74□□□□□ -1.01
USP48-209ENST00000487880 REC114Q7Z4M0 266 aa8.74□□□□□ -1.01
USP48-209ENST00000487880 UTP4Q969X6 686 aaKnown RBP8.74□□□□□ -1.01
USP48-209ENST00000487880 SPOCK3Q9BQ16 436 aa8.74□□□□□ -1.01
USP48-209ENST00000487880 TPSG1Q9NRR2 321 aa8.74□□□□□ -1.01
USP48-209ENST00000487880 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.73□□□□□ -1.01
USP48-209ENST00000487880 GAS2O43903 313 aaKnown RBP8.73□□□□□ -1.01
USP48-209ENST00000487880 BPNT1O95861 308 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 NEFMP07197 916 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 ZBTB37Q5TC79 503 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 DIEXFQ68CQ4 756 aaKnown RBP8.73□□□□□ -1.01
USP48-209ENST00000487880 C12orf40Q86WS4 652 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 FAM20CQ8IXL6 584 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 RNF214Q8ND24 703 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 ELMO3Q96BJ8 720 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 ACSS3Q9H6R3 686 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 CSADQ9Y600 493 aa8.73□□□□□ -1.01
USP48-209ENST00000487880 FANCGO15287 622 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 ASPAP45381 313 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 APOBRQ0VD83 1088 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 TTLL4Q14679 1199 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 PPM1JQ5JR12 505 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 CDPF1Q6NVV7 123 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 SLITRK4Q8IW52 837 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 RASGRP4Q8TDF6 673 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 EZH1Q92800 747 aaPredicted RBP8.72□□□□□ -1.01
USP48-209ENST00000487880 TINF2Q9BSI4 451 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 PRR36Q9H6K5 1346 aa8.72□□□□□ -1.01
USP48-209ENST00000487880 TLR3O15455 904 aaKnown RBP8.71□□□□□ -1.02
USP48-209ENST00000487880 DHX15O43143 795 aaKnown RBP8.71□□□□□ -1.02
USP48-209ENST00000487880 BMP3P12645 472 aa8.71□□□□□ -1.02
USP48-209ENST00000487880 TNNI2P48788 182 aa8.71□□□□□ -1.02
USP48-209ENST00000487880 CWF19L2Q2TBE0 894 aaKnown RBP8.71□□□□□ -1.02
USP48-209ENST00000487880 SGO2Q562F6 1265 aa8.71□□□□□ -1.02
USP48-209ENST00000487880 TP53INP1Q96A56 240 aa8.71□□□□□ -1.02
USP48-209ENST00000487880 GPRASP2Q96D09 838 aa8.71□□□□□ -1.02
USP48-209ENST00000487880 POLR3KQ9Y2Y1 108 aaPredicted RBP8.71□□□□□ -1.02
USP48-209ENST00000487880 MSTNO14793 375 aa8.7□□□□□ -1.02
USP48-209ENST00000487880 USP11P51784 963 aa8.7□□□□□ -1.02
USP48-209ENST00000487880 FBLIM1Q8WUP2 373 aa8.7□□□□□ -1.02
USP48-209ENST00000487880 WNT10AQ9GZT5 417 aa8.7□□□□□ -1.02
USP48-209ENST00000487880 SEMA6CQ9H3T2 930 aa8.7□□□□□ -1.02
USP48-209ENST00000487880 PRAMEF27A3QJZ7 478 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms