RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 SSC5DA1L4H1 1573 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 ZNF157P51786 506 aaPredicted RBP17.66■□□□□ 0.42
LIMS3-205ENST00000487150 ADGRA1Q86SQ6 560 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 ANKRD13AQ8IZ07 590 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 DNAJC5GQ8N7S2 189 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 MIGA1Q8NAN2 632 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 SH3RF3Q8TEJ3 882 aaPredicted RBP17.66■□□□□ 0.42
LIMS3-205ENST00000487150 FSD1Q9BTV5 496 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 ZNF341Q9BYN7 854 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 OSBPL5Q9H0X9 879 aaPredicted RBP17.66■□□□□ 0.42
LIMS3-205ENST00000487150 CSADQ9Y600 493 aa17.66■□□□□ 0.42
LIMS3-205ENST00000487150 MYH2Q9UKX2 1941 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 TCRBV5S4A2TA0A5A2 114 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 HLA-DOAP06340 250 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 USP5P45974 858 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 LDLRAD1Q5T700 205 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 REM2Q8IYK8 340 aaPredicted RBP17.65■□□□□ 0.42
LIMS3-205ENST00000487150 APPBP2Q92624 585 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 AIDAQ96BJ3 306 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 TAOK2Q9UL54 1235 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 FLT1P17948 1338 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 WDR33Q9C0J8 1336 aaKnown RBP17.65■□□□□ 0.42
LIMS3-205ENST00000487150 DOCK2Q92608 1830 aa17.65■□□□□ 0.42
LIMS3-205ENST00000487150 MAP2K2P36507 400 aa17.64■□□□□ 0.41
LIMS3-205ENST00000487150 AMOTL1Q8IY63 956 aa17.64■□□□□ 0.41
LIMS3-205ENST00000487150 TGFBRAP1Q8WUH2 860 aa17.64■□□□□ 0.41
LIMS3-205ENST00000487150 RIOK1Q9BRS2 568 aaKnown RBP17.64■□□□□ 0.41
LIMS3-205ENST00000487150 DDX4Q9NQI0 724 aaKnown RBP17.64■□□□□ 0.41
LIMS3-205ENST00000487150 UBE2Q2LH0YL09 131 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 RNF113AO15541 343 aaKnown RBP17.63■□□□□ 0.41
LIMS3-205ENST00000487150 SLC10A3P09131 477 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 VEGFBP49765 207 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 PRKG1Q13976 671 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 PLEKHM2Q8IWE5 1019 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 JMYQ8N9B5 988 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 CCDC136Q96JN2 1154 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 WRNIP1Q96S55 665 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 TRIM34Q9BYJ4 488 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 PI4KBQ9UBF8 816 aa17.63■□□□□ 0.41
LIMS3-205ENST00000487150 HERC5Q9UII4 1024 aaKnown RBP17.63■□□□□ 0.41
LIMS3-205ENST00000487150 TBC1D12O60347 775 aa17.62■□□□□ 0.41
LIMS3-205ENST00000487150 GNAT2P19087 354 aa17.62■□□□□ 0.41
LIMS3-205ENST00000487150 MAP3K9P80192 1104 aa17.62■□□□□ 0.41
LIMS3-205ENST00000487150 MAP2K1Q02750 393 aaPredicted RBP17.62■□□□□ 0.41
LIMS3-205ENST00000487150 CYP4F22Q6NT55 531 aa17.62■□□□□ 0.41
LIMS3-205ENST00000487150 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.62■□□□□ 0.41
LIMS3-205ENST00000487150 SLC10A4Q96EP9 437 aa17.62■□□□□ 0.41
LIMS3-205ENST00000487150 ATP8A2Q9NTI2 1148 aa17.62■□□□□ 0.41
LIMS3-205ENST00000487150 CEP350Q5VT06 3117 aa17.61■□□□□ 0.41
LIMS3-205ENST00000487150 USP2O75604 605 aaPredicted RBP17.61■□□□□ 0.41
LIMS3-205ENST00000487150 MBD4O95243 580 aa17.61■□□□□ 0.41
LIMS3-205ENST00000487150 ZBTB48P10074 688 aaPredicted RBP17.61■□□□□ 0.41
LIMS3-205ENST00000487150 DYNLL1P63167 89 aaKnown RBP17.61■□□□□ 0.41
LIMS3-205ENST00000487150 GRM1Q13255 1194 aa17.61■□□□□ 0.41
LIMS3-205ENST00000487150 TTC6Q86TZ1 520 aa17.61■□□□□ 0.41
LIMS3-205ENST00000487150 RASAL3Q86YV0 1011 aa17.61■□□□□ 0.41
LIMS3-205ENST00000487150 MAPKAPK5Q8IW41 473 aa17.61■□□□□ 0.41
LIMS3-205ENST00000487150 TRIM6-TRIM34B2RNG4 842 aa17.6■□□□□ 0.41
LIMS3-205ENST00000487150 HIP1O00291 1037 aa17.6■□□□□ 0.41
LIMS3-205ENST00000487150 MOB2Q70IA6 237 aa17.6■□□□□ 0.41
LIMS3-205ENST00000487150 CDAN1Q8IWY9 1227 aa17.6■□□□□ 0.41
LIMS3-205ENST00000487150 BEGAINQ9BUH8 593 aa17.6■□□□□ 0.41
LIMS3-205ENST00000487150 POLR2AP24928 1970 aaKnown RBP17.59■□□□□ 0.41
LIMS3-205ENST00000487150 DDTLA6NHG4 134 aaPredicted RBP17.59■□□□□ 0.41
LIMS3-205ENST00000487150 CA12O43570 354 aa17.59■□□□□ 0.41
LIMS3-205ENST00000487150 MAP3K10Q02779 954 aa17.59■□□□□ 0.41
LIMS3-205ENST00000487150 VGLL4Q14135 290 aa17.59■□□□□ 0.41
LIMS3-205ENST00000487150 FOXP4Q8IVH2 680 aaPredicted RBP17.59■□□□□ 0.41
LIMS3-205ENST00000487150 LCORLQ8N3X6 602 aa17.59■□□□□ 0.41
LIMS3-205ENST00000487150 CRACR2BQ8N4Y2 399 aaPredicted RBP17.59■□□□□ 0.41
LIMS3-205ENST00000487150 EHD4Q9H223 541 aa17.59■□□□□ 0.41
LIMS3-205ENST00000487150 ZNF112Q9UJU3 913 aa17.59■□□□□ 0.41
LIMS3-205ENST00000487150 THSD7BQ9C0I4 1608 aa17.58■□□□□ 0.41
LIMS3-205ENST00000487150 FAM155AB1AL88 458 aaPredicted RBP17.58■□□□□ 0.4
LIMS3-205ENST00000487150 SREBF2Q12772 1141 aa17.58■□□□□ 0.4
LIMS3-205ENST00000487150 NOL9Q5SY16 702 aaKnown RBP17.58■□□□□ 0.4
LIMS3-205ENST00000487150 GIMAP6Q6P9H5 292 aa17.58■□□□□ 0.4
LIMS3-205ENST00000487150 MIGA2Q7L4E1 593 aa17.58■□□□□ 0.4
LIMS3-205ENST00000487150 SH3BP5LQ7L8J4 393 aa17.58■□□□□ 0.4
LIMS3-205ENST00000487150 ZFPM1Q8IX07 1006 aa17.58■□□□□ 0.4
LIMS3-205ENST00000487150 ARMT1Q9H993 441 aa17.58■□□□□ 0.4
LIMS3-205ENST00000487150 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.58■□□□□ 0.4
LIMS3-205ENST00000487150 PICK1Q9NRD5 415 aa17.58■□□□□ 0.4
LIMS3-205ENST00000487150 CTNND1O60716 968 aaKnown RBP17.57■□□□□ 0.4
LIMS3-205ENST00000487150 POLR3DP05423 398 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-205ENST00000487150 MFAP1P55081 439 aaKnown RBP17.57■□□□□ 0.4
LIMS3-205ENST00000487150 INHBEP58166 350 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 ZMYM1Q5SVZ6 1142 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 SPRYD7Q5W111 196 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-205ENST00000487150 ERO1BQ86YB8 467 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 RILPL2Q969X0 211 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 TBC1D2Q9BYX2 928 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 NACAP1Q9BZK3 213 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 GINM1Q9NU53 330 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 MCM9Q9NXL9 1143 aa17.57■□□□□ 0.4
LIMS3-205ENST00000487150 MANSC4A6NHS7 340 aaPredicted RBP17.56■□□□□ 0.4
LIMS3-205ENST00000487150 SPDYE5A6NIY4 337 aa17.56■□□□□ 0.4
LIMS3-205ENST00000487150 GPAA1O43292 621 aa17.56■□□□□ 0.4
LIMS3-205ENST00000487150 METTL16Q86W50 562 aaKnown RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms