RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 TRIM6-TRIM34B2RNG4 842 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 UBE2Q2LH0YL09 131 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 PPP1R12BO60237 982 aaPredicted RBP14.3□□□□□ -0.12
HPS4-214ENST00000485842 MBD4O95243 580 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 UBE3CQ15386 1083 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 DEFB115Q30KQ5 88 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 ARMC9Q7Z3E5 817 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 CERS3Q8IU89 383 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 TGFBRAP1Q8WUH2 860 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 RIOK1Q9BRS2 568 aaKnown RBP14.3□□□□□ -0.12
HPS4-214ENST00000485842 ARMT1Q9H993 441 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 OTOFQ9HC10 1997 aa14.3□□□□□ -0.12
HPS4-214ENST00000485842 RNF113AO15541 343 aaKnown RBP14.29□□□□□ -0.12
HPS4-214ENST00000485842 USP5P45974 858 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 LRRFIP1Q32MZ4 808 aaKnown RBP14.29□□□□□ -0.12
HPS4-214ENST00000485842 LCORLQ8N3X6 602 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 RILPL2Q969X0 211 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 EVI5LQ96CN4 794 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 CSRNP1Q96S65 589 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 CRNKL1Q9BZJ0 848 aaKnown RBP14.29□□□□□ -0.12
HPS4-214ENST00000485842 OSBPL5Q9H0X9 879 aaPredicted RBP14.29□□□□□ -0.12
HPS4-214ENST00000485842 OSBPL3Q9H4L5 887 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 FLT1P17948 1338 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 MYH1P12882 1939 aa14.29□□□□□ -0.12
HPS4-214ENST00000485842 DDTLA6NHG4 134 aaPredicted RBP14.28□□□□□ -0.12
HPS4-214ENST00000485842 NPM3O75607 178 aaKnown RBP14.28□□□□□ -0.12
HPS4-214ENST00000485842 COL2A1P02458 1487 aaPredicted RBP14.28□□□□□ -0.12
HPS4-214ENST00000485842 ZFYP08048 801 aaPredicted RBP14.28□□□□□ -0.12
HPS4-214ENST00000485842 IREB2P48200 963 aaKnown RBP14.28□□□□□ -0.12
HPS4-214ENST00000485842 SLC4A8Q2Y0W8 1093 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 DCAF15Q66K64 600 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 CYP4F22Q6NT55 531 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 MIGA2Q7L4E1 593 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 SH3BP5LQ7L8J4 393 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 APPBP2Q92624 585 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 AIDAQ96BJ3 306 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 KLRG1Q96E93 195 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 HOOK2Q96ED9 719 aa14.28□□□□□ -0.12
HPS4-214ENST00000485842 PUS7LQ9H0K6 701 aaKnown RBP14.28□□□□□ -0.12
HPS4-214ENST00000485842 SAP30BPQ9UHR5 308 aaKnown RBP14.28□□□□□ -0.12
HPS4-214ENST00000485842 ATRNL1Q5VV63 1379 aa14.27□□□□□ -0.12
HPS4-214ENST00000485842 USP2O75604 605 aaPredicted RBP14.27□□□□□ -0.13
HPS4-214ENST00000485842 RGMBQ6NW40 437 aa14.27□□□□□ -0.13
HPS4-214ENST00000485842 CAPNS2Q96L46 248 aa14.27□□□□□ -0.13
HPS4-214ENST00000485842 DDX60LQ5H9U9 1706 aaKnown RBP14.27□□□□□ -0.13
HPS4-214ENST00000485842 M0R2C6 588 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 PRKAB2O43741 272 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 ECE1P42892 770 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 VEGFBP49765 207 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 ZNF157P51786 506 aaPredicted RBP14.26□□□□□ -0.13
HPS4-214ENST00000485842 MAP3K11Q16584 847 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 TTC22Q5TAA0 569 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 ERICH6BQ5W0A0 696 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 SKAP1Q86WV1 359 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 DNAJC5GQ8N7S2 189 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 SDR42E1Q8WUS8 393 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 OSBP2Q969R2 916 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 HHIPL1Q96JK4 782 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 ZNF341Q9BYN7 854 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 PPP4R2Q9NY27 417 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 PALD1Q9ULE6 856 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 SIPA1L1O43166 1804 aa14.26□□□□□ -0.13
HPS4-214ENST00000485842 WDR33Q9C0J8 1336 aaKnown RBP14.25□□□□□ -0.13
HPS4-214ENST00000485842 FAM196BA6NMK8 535 aa14.25□□□□□ -0.13
HPS4-214ENST00000485842 SLURP2P0DP57 97 aa14.25□□□□□ -0.13
HPS4-214ENST00000485842 ZMYM1Q5SVZ6 1142 aa14.25□□□□□ -0.13
HPS4-214ENST00000485842 LDLRAD1Q5T700 205 aa14.25□□□□□ -0.13
HPS4-214ENST00000485842 CLMNQ96JQ2 1002 aa14.25□□□□□ -0.13
HPS4-214ENST00000485842 WRNIP1Q96S55 665 aa14.25□□□□□ -0.13
HPS4-214ENST00000485842 SLC4A4Q9Y6R1 1079 aa14.25□□□□□ -0.13
HPS4-214ENST00000485842 BAZ2AQ9UIF9 1905 aaKnown RBP14.25□□□□□ -0.13
HPS4-214ENST00000485842 GPAA1O43292 621 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 AOC2O75106 756 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 HLA-DOAP06340 250 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 GSPT1P15170 499 aaKnown RBP14.24□□□□□ -0.13
HPS4-214ENST00000485842 MAP3K9P80192 1104 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 RASAL3Q86YV0 1011 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 ANKRD13AQ8IZ07 590 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 SEC62Q99442 399 aaKnown RBP14.24□□□□□ -0.13
HPS4-214ENST00000485842 TRIM34Q9BYJ4 488 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 DHX36Q9H2U1 1008 aaKnown RBP14.24□□□□□ -0.13
HPS4-214ENST00000485842 ELP3Q9H9T3 547 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 MCM9Q9NXL9 1143 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 CSADQ9Y600 493 aa14.24□□□□□ -0.13
HPS4-214ENST00000485842 THSD7BQ9C0I4 1608 aa14.23□□□□□ -0.13
HPS4-214ENST00000485842 SLC10A3P09131 477 aa14.23□□□□□ -0.13
HPS4-214ENST00000485842 INPP5BP32019 993 aa14.23□□□□□ -0.13
HPS4-214ENST00000485842 MKRN3Q13064 507 aaKnown RBP14.23□□□□□ -0.13
HPS4-214ENST00000485842 NMIQ13287 307 aaPredicted RBP14.23□□□□□ -0.13
HPS4-214ENST00000485842 CRACR2BQ8N4Y2 399 aaPredicted RBP14.23□□□□□ -0.13
HPS4-214ENST00000485842 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.23□□□□□ -0.13
HPS4-214ENST00000485842 CCDC102AQ96A19 550 aa14.23□□□□□ -0.13
HPS4-214ENST00000485842 SLC10A4Q96EP9 437 aa14.23□□□□□ -0.13
HPS4-214ENST00000485842 STRBPQ96SI9 672 aaKnown RBP14.23□□□□□ -0.13
HPS4-214ENST00000485842 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.23□□□□□ -0.135e-8■■■■■ 32.9
HPS4-214ENST00000485842 DCP1AQ9NPI6 582 aaPredicted RBP14.23□□□□□ -0.13
HPS4-214ENST00000485842 A0A0D9SFI3 127 aa14.22□□□□□ -0.13
HPS4-214ENST00000485842 POLR3DP05423 398 aaPredicted RBP14.22□□□□□ -0.13
HPS4-214ENST00000485842 VGLL4Q14135 290 aa14.22□□□□□ -0.13
HPS4-214ENST00000485842 CCDC129Q6ZRS4 1044 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms