RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 RASGRF1Q13972 1273 aa17.23■□□□□ 0.35
SQSTM1-208ENST00000485412 NOL9Q5SY16 702 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-208ENST00000485412 SH3BP5LQ7L8J4 393 aa17.23■□□□□ 0.35
SQSTM1-208ENST00000485412 SLAIN1Q8ND83 568 aa17.23■□□□□ 0.35
SQSTM1-208ENST00000485412 USP40Q9NVE5 1235 aa17.23■□□□□ 0.35
SQSTM1-208ENST00000485412 TNNQ9UQP3 1299 aa17.23■□□□□ 0.35
SQSTM1-208ENST00000485412 SALL1Q9NSC2 1324 aa17.22■□□□□ 0.35
SQSTM1-208ENST00000485412 FARP2O94887 1054 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-208ENST00000485412 TIMM10P62072 90 aa17.22■□□□□ 0.35
SQSTM1-208ENST00000485412 CCDC102BQ68D86 513 aa17.22■□□□□ 0.35
SQSTM1-208ENST00000485412 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-208ENST00000485412 ATAD5Q96QE3 1844 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 CXCL11O14625 94 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 CYP2C8P10632 490 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 BCRP11274 1271 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 IL15P40933 162 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 RGS3P49796 1198 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 UBE2Q1Q7Z7E8 422 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 ZNF384Q8TF68 577 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 U2AF1L4Q8WU68 220 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 COPRSQ9NQ92 184 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 DDX4Q9NQI0 724 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 FBXO3Q9UK99 471 aa17.21■□□□□ 0.35
SQSTM1-208ENST00000485412 GAKO14976 1311 aa17.21■□□□□ 0.34
SQSTM1-208ENST00000485412 MYO5AQ9Y4I1 1855 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 PHF20L1A8MW92 1017 aa17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 RARSP54136 660 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 GPAT2Q6NUI2 795 aa17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 UNC93B1Q9H1C4 597 aa17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 PICK1Q9NRD5 415 aa17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 GNL3LQ9NVN8 582 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 DENND2AQ9ULE3 1009 aa17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 GABRQQ9UN88 632 aa17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 DOCK3Q8IZD9 2030 aa17.2■□□□□ 0.34
SQSTM1-208ENST00000485412 DDTLA6NHG4 134 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 ZBTB7BO15156 539 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 ADCY3O60266 1144 aa17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 TFCP2Q12800 502 aa17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 PI16Q6UXB8 463 aa17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 GADL1Q6ZQY3 521 aa17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 FASTKD5Q7L8L6 764 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 CCDC84Q86UT8 332 aaPredicted RBP17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 API5Q9BZZ5 524 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-208ENST00000485412 CDK5RAP2Q96SN8 1893 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 A0A1B0GUL7 405 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 SEMA3EO15041 775 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 SGPL1O95470 568 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 SCYL3Q8IZE3 742 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 ABCF2Q9UG63 623 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 ZHX2Q9Y6X8 837 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 SIPA1L1O43166 1804 aa17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 RANBP2P49792 3224 aaKnown RBP17.18■□□□□ 0.34
SQSTM1-208ENST00000485412 A0A0G2JLL6 359 aaPredicted RBP17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 TNPO2O14787 897 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 EVI5O60447 810 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 TFRCP02786 760 aaKnown RBP17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 INHAP05111 366 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 ELNP15502 786 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 FLT3LGP49771 235 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 PICALMQ13492 652 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 PRRT2Q7Z6L0 340 aaPredicted RBP17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 ZSCAN29Q8IWY8 852 aaPredicted RBP17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 XAGE2Q96GT9 111 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 IDI2Q9BXS1 227 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 PRO3102Q9H379 93 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 TAOK2Q9UL54 1235 aa17.17■□□□□ 0.34
SQSTM1-208ENST00000485412 FAM196BA6NMK8 535 aa17.16■□□□□ 0.34
SQSTM1-208ENST00000485412 SRGAP3O43295 1099 aa17.16■□□□□ 0.34
SQSTM1-208ENST00000485412 CT47B1P0C2W7 299 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-208ENST00000485412 BTDP43251 543 aa17.16■□□□□ 0.34
SQSTM1-208ENST00000485412 DZIP1Q86YF9 867 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-208ENST00000485412 SMCR8Q8TEV9 937 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-208ENST00000485412 LOC285556D6RIA3 1793 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 ENTPD3O75355 529 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 CAPN2P17655 700 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 PTPRAP18433 802 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 RHBDL3P58872 404 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 MECOMQ03112 1051 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 TBC1D9Q6ZT07 1266 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 SLC17A8Q8NDX2 589 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 PXYLP1Q8TE99 480 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 DEFB118Q96PH6 123 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 SLC45A1Q9Y2W3 748 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 AFG3L2Q9Y4W6 797 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 MROH7-TTC4A0A0A0MT08 1334 aa17.15■□□□□ 0.34
SQSTM1-208ENST00000485412 ALPK3Q96L96 1907 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 PNMA6EA0A0J9YXQ4 647 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 A0A1W2PPC1 479 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 ZBTB22O15209 634 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 TRIM27P14373 513 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 MAP3K10Q02779 954 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 MTX1Q13505 466 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 HMG20BQ9P0W2 317 aa17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 PDS5AQ29RF7 1337 aaKnown RBP17.14■□□□□ 0.33
SQSTM1-208ENST00000485412 MAST2Q6P0Q8 1798 aa17.13■□□□□ 0.33
SQSTM1-208ENST00000485412 TRIM75PA6NK02 468 aa17.13■□□□□ 0.33
SQSTM1-208ENST00000485412 BCAR3O75815 825 aa17.13■□□□□ 0.33
SQSTM1-208ENST00000485412 IRF5Q13568 498 aa17.13■□□□□ 0.33
SQSTM1-208ENST00000485412 ZGPATQ8N5A5 531 aaKnown RBP17.13■□□□□ 0.33
SQSTM1-208ENST00000485412 COA7Q96BR5 231 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms