RNA–Protein interactions for RNA: ENST00000481708.1

SMC6-208, Transcript of structural maintenance of chromosomes 6, human

TSL 2

Gene SMC6, Length 3,897 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC6-208	ENST00000481708	FERMT3	Q86UX7	667 aa		4.4	□□□□□ -1.71
SMC6-208	ENST00000481708	KDF1	Q8NAX2	398 aa	Predicted RBP	4.4	□□□□□ -1.71
SMC6-208	ENST00000481708	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.4	□□□□□ -1.71
SMC6-208	ENST00000481708	TYW1	Q9NV66	732 aa	Known RBP	4.4	□□□□□ -1.71
SMC6-208	ENST00000481708	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.4	□□□□□ -1.71
SMC6-208	ENST00000481708	NINL	Q9Y2I6	1382 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	TTC39B	Q5VTQ0	682 aa	Predicted RBP	4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	C14orf80	Q86SX3	495 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	MPND	Q8N594	471 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	CD2BP2	O95400	341 aa	Known RBP	4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	THNSL2	Q86YJ6	484 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	CSRNP1	Q96S65	589 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	ARPC5L	Q9BPX5	153 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	FOXO3	O43524	673 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	INHA	P05111	366 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	MCL1	Q07820	350 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	SOGA3	Q5TF21	947 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	CKAP2L	Q8IYA6	745 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	CCDC116	Q8IYX3	515 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	RAB6B	Q9NRW1	208 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	CD2AP	Q9Y5K6	639 aa		4.39	□□□□□ -1.71
SMC6-208	ENST00000481708	COL11A2	P13942	1736 aa	Predicted RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	INSR	P06213	1382 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	DHX57	Q6P158	1386 aa	Known RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	ECM29	Q5VYK3	1845 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	PPP1R12A	O14974	1030 aa	Predicted RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	SH3BP5	O60239	455 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	C21orf62-AS1	Q17RA5	79 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	C1orf53	Q5VUE5	145 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	NBPF6	Q5VWK0	638 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	NBPF4	Q96M43	638 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	APBA2	Q99767	749 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	SERTAD1	Q9UHV2	236 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	EFR3B	Q9Y2G0	817 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	RBM19	Q9Y4C8	960 aa	Known RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	ZNF644	Q9H582	1327 aa	Predicted RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	FAM83G	A6ND36	823 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	WNT7A	O00755	349 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	KIF4A	O95239	1232 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	LDHA	P00338	332 aa	Known RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	PDGFA	P04085	211 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	FOXK2	Q01167	660 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	EXOSC10	Q01780	885 aa	Known RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	DHX8	Q14562	1220 aa	Known RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	ALG1L	Q6GMV1	187 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	WDR75	Q8IWA0	830 aa	Known RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	PLD4	Q96BZ4	506 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	MPHOSPH6	Q99547	160 aa	Known RBP	4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	NRBP1	Q9UHY1	535 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	PRKAB1	Q9Y478	270 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	MEGF6	O75095	1541 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	TSPAN6	O43657	245 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	ZNF295-AS1	Q8N0V1	137 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	SHD	Q96IW2	340 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	ATP8A1	Q9Y2Q0	1164 aa		4.38	□□□□□ -1.71
SMC6-208	ENST00000481708	SHTN1	A0MZ66	631 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	DIAPH1	O60610	1272 aa	Known RBP	4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	SCGB1D2	O95969	90 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	SOX9	P48436	509 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	C10orf62	Q5T681	223 aa	Predicted RBP	4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	FBXL19	Q6PCT2	694 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	ARNT2	Q9HBZ2	717 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	ALDH1L1	O75891	902 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	FGA	P02671	866 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	CCDC81	Q6ZN84	652 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	SLC4A9	Q96Q91	983 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	BCS1L	Q9Y276	419 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	IL2RA	P01589	272 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	FAM163B	P0C2L3	166 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	SLC19A1	P41440	591 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	NR5A1	Q13285	461 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	TTF1	Q15361	905 aa	Predicted RBP	4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	SPRYD7	Q5W111	196 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	LHFPL2	Q6ZUX7	228 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	BRINP3	Q76B58	766 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	SPATC1	Q76KD6	591 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	ARHGEF10L	Q9HCE6	1279 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	PTPRH	Q9HD43	1115 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	PKD2L1	Q9P0L9	805 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	KLF15	Q9UIH9	416 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	MSH6	P52701	1360 aa		4.37	□□□□□ -1.71
SMC6-208	ENST00000481708	DNM1	Q05193	864 aa	Known RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	CBX2	Q14781	532 aa	Predicted RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	KLF16	Q9BXK1	252 aa	Predicted RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	TNKS2	Q9H2K2	1166 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	SIRPG	Q9P1W8	387 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	HRH3	Q9Y5N1	445 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	YTHDC2	Q9H6S0	1430 aa	Known RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708		A0A087X0B3	334 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	GART	P22102	1010 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	DHX9	Q08211	1270 aa	Known RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	SEPT6	Q14141	434 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	JMY	Q8N9B5	988 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	AVEN	Q9NQS1	362 aa	Predicted RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	MAP3K20	Q9NYL2	800 aa	Known RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	SCHIP1	Q9P0W5	487 aa	Predicted RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	FOXD3	Q9UJU5	478 aa	Predicted RBP	4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	SCN4A	P35499	1836 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	CTC1	Q2NKJ3	1217 aa		4.36	□□□□□ -1.71
SMC6-208	ENST00000481708	EDEM1	Q92611	657 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms