RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 DLL1O00548 723 aa8.76□□□□□ -1.01
VPS50-215ENST00000480943 JUNBP17275 347 aaPredicted RBP8.76□□□□□ -1.01
VPS50-215ENST00000480943 FKBP5Q13451 457 aaPredicted RBP8.76□□□□□ -1.01
VPS50-215ENST00000480943 PRIMPOLQ96LW4 560 aa8.76□□□□□ -1.01
VPS50-215ENST00000480943 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS50-215ENST00000480943 BCS1LQ9Y276 419 aa8.76□□□□□ -1.01
VPS50-215ENST00000480943 ATRNO75882 1429 aa8.76□□□□□ -1.01
VPS50-215ENST00000480943 GLI3P10071 1580 aa8.76□□□□□ -1.01
VPS50-215ENST00000480943 ARHGEF10O15013 1369 aa8.75□□□□□ -1.01
VPS50-215ENST00000480943 RBM6P78332 1123 aaKnown RBP8.75□□□□□ -1.01
VPS50-215ENST00000480943 MYO19Q96H55 970 aa8.75□□□□□ -1.01
VPS50-215ENST00000480943 NAGPAQ9UK23 515 aa8.75□□□□□ -1.01
VPS50-215ENST00000480943 BCL9LQ86UU0 1499 aa8.75□□□□□ -1.01
VPS50-215ENST00000480943 SLIT2O94813 1529 aa8.75□□□□□ -1.01
VPS50-215ENST00000480943 GPRASP1Q5JY77 1395 aa8.74□□□□□ -1.01
VPS50-215ENST00000480943 EPB42P16452 691 aa8.74□□□□□ -1.01
VPS50-215ENST00000480943 TMEM164Q5U3C3 297 aa8.74□□□□□ -1.01
VPS50-215ENST00000480943 SPOCD1Q6ZMY3 1216 aa8.74□□□□□ -1.01
VPS50-215ENST00000480943 Q6ZS46 218 aa8.74□□□□□ -1.01
VPS50-215ENST00000480943 ABI1Q8IZP0 508 aa8.74□□□□□ -1.01
VPS50-215ENST00000480943 NGDNQ8NEJ9 315 aaKnown RBP8.74□□□□□ -1.01
VPS50-215ENST00000480943 DMGDHQ9UI17 866 aaKnown RBP8.74□□□□□ -1.01
VPS50-215ENST00000480943 CENPJQ9HC77 1338 aaPredicted RBP8.74□□□□□ -1.01
VPS50-215ENST00000480943 ALX3O95076 343 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 GLB1P16278 677 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 IDH3AP50213 366 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 OCLNQ16625 522 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 FAM35AQ86V20 835 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 CCDC82Q8N4S0 544 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 NUDT16Q96DE0 195 aaKnown RBP8.73□□□□□ -1.01
VPS50-215ENST00000480943 PNMA5Q96PV4 448 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 DBNDD2Q9BQY9 259 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 CDK19Q9BWU1 502 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 TRPC5Q9UL62 973 aaPredicted RBP8.73□□□□□ -1.01
VPS50-215ENST00000480943 ANGEL1Q9UNK9 670 aaKnown RBP8.73□□□□□ -1.01
VPS50-215ENST00000480943 NRKQ7Z2Y5 1582 aa8.73□□□□□ -1.01
VPS50-215ENST00000480943 ROCK2O75116 1388 aaKnown RBP8.73□□□□□ -1.01
VPS50-215ENST00000480943 TRIM26Q12899 539 aaPredicted RBP8.72□□□□□ -1.01
VPS50-215ENST00000480943 C11orf91Q3C1V1 193 aa8.72□□□□□ -1.01
VPS50-215ENST00000480943 TTC9Q92623 222 aa8.72□□□□□ -1.01
VPS50-215ENST00000480943 SRA1Q9HD15 236 aaKnown RBP8.72□□□□□ -1.01
VPS50-215ENST00000480943 PPIP5K1Q6PFW1 1433 aa8.71□□□□□ -1.01
VPS50-215ENST00000480943 MON2Q7Z3U7 1717 aa8.71□□□□□ -1.01
VPS50-215ENST00000480943 RALGAPBQ86X10 1494 aa8.71□□□□□ -1.01
VPS50-215ENST00000480943 INPP5BP32019 993 aa8.71□□□□□ -1.02
VPS50-215ENST00000480943 ARSDP51689 593 aa8.71□□□□□ -1.02
VPS50-215ENST00000480943 GRIK5Q16478 980 aa8.71□□□□□ -1.02
VPS50-215ENST00000480943 LRFN2Q9ULH4 789 aa8.71□□□□□ -1.02
VPS50-215ENST00000480943 PIK3C2AO00443 1686 aa8.71□□□□□ -1.02
VPS50-215ENST00000480943 POLR3AO14802 1390 aaPredicted RBP8.71□□□□□ -1.02
VPS50-215ENST00000480943 TONSLQ96HA7 1378 aa8.71□□□□□ -1.02
VPS50-215ENST00000480943 RGPD5Q99666 1765 aa8.71□□□□□ -1.02
VPS50-215ENST00000480943 EP400Q96L91 3159 aa8.7□□□□□ -1.02
VPS50-215ENST00000480943 DEAF1O75398 565 aaPredicted RBP8.7□□□□□ -1.02
VPS50-215ENST00000480943 MICAL2O94851 1124 aa8.7□□□□□ -1.02
VPS50-215ENST00000480943 RNF43Q68DV7 783 aa8.7□□□□□ -1.02
VPS50-215ENST00000480943 UNC5CLQ8IV45 518 aa8.7□□□□□ -1.02
VPS50-215ENST00000480943 CLP1Q92989 425 aaKnown RBP8.7□□□□□ -1.02
VPS50-215ENST00000480943 GSX2Q9BZM3 304 aa8.7□□□□□ -1.02
VPS50-215ENST00000480943 CXXC1Q9P0U4 656 aaPredicted RBP8.7□□□□□ -1.02
VPS50-215ENST00000480943 ACEP12821 1306 aa8.7□□□□□ -1.02
VPS50-215ENST00000480943 WNK3Q9BYP7 1800 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 PRR19A6NJB7 356 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 CCINQ13939 588 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 NBPF8Q3BBV2 869 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 COX20Q5RI15 118 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 ELMSAN1Q6PJG2 1045 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 COL26A1Q96A83 441 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 IFT43Q96FT9 208 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 MKNK1Q9BUB5 465 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.69□□□□□ -1.02
VPS50-215ENST00000480943 LMO7Q8WWI1 1683 aa8.69□□□□□ -1.02
VPS50-215ENST00000480943 CPB1P15086 417 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 NFKB1P19838 968 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 GRNP28799 593 aaKnown RBP8.68□□□□□ -1.02
VPS50-215ENST00000480943 UVSSAQ2YD98 709 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 NUTM2GQ5VZR2 741 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 C16orf46Q6P387 395 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 MAP4K3Q8IVH8 894 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 LPIN3Q9BQK8 851 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 CEP41Q9BYV8 373 aa8.68□□□□□ -1.02
VPS50-215ENST00000480943 FAM83GA6ND36 823 aa8.67□□□□□ -1.02
VPS50-215ENST00000480943 LTN1O94822 1766 aa8.67□□□□□ -1.02
VPS50-215ENST00000480943 KRTAP19-4Q3LI73 84 aa8.67□□□□□ -1.02
VPS50-215ENST00000480943 EVC2Q86UK5 1308 aa8.67□□□□□ -1.02
VPS50-215ENST00000480943 TREML1Q86YW5 311 aa8.67□□□□□ -1.02
VPS50-215ENST00000480943 C1orf115Q9H7X2 142 aa8.67□□□□□ -1.02
VPS50-215ENST00000480943 THSD7AQ9UPZ6 1657 aa8.67□□□□□ -1.02
VPS50-215ENST00000480943 CCDC9Q9Y3X0 531 aaKnown RBP8.67□□□□□ -1.02
VPS50-215ENST00000480943 RGPD1P0DJD0 1748 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 USP54Q70EL1 1684 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 USP6P35125 1406 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 KIAA0232Q92628 1395 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 ITGB5P18084 799 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 PKN1Q16512 942 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 CBLL1Q75N03 491 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 SAP130Q9H0E3 1048 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 BTG4Q9NY30 223 aa8.66□□□□□ -1.02
VPS50-215ENST00000480943 SLIT3O75094 1523 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 VPS72Q15906 364 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms