RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 FAM117BQ6P1L5 589 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 LILRB2Q8N423 598 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 TMEM40Q8WWA1 233 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 KCNB2Q92953 911 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 DNAJC7Q99615 494 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 TMX1Q9H3N1 280 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 IGF1RP08069 1367 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 A0A1W2PQH9 124 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 FSCN2O14926 492 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 GRIN3BO60391 1043 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 HTR3BO95264 441 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 EPXP11678 715 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 GUCY2CP25092 1073 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 CDK8P49336 464 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 HNRNPUQ00839 825 aaKnown RBP eCLIP7.49□□□□□ -1.21
UPF3B-203ENST00000478840 POU4F3Q15319 338 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 INTS3Q68E01 1043 aaKnown RBP7.49□□□□□ -1.21
UPF3B-203ENST00000478840 ILDR2Q71H61 639 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 GPR161Q8N6U8 529 aaKnown RBP7.49□□□□□ -1.21
UPF3B-203ENST00000478840 MICAL1Q8TDZ2 1067 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 SH3TC2Q8TF17 1288 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 NUDT8Q8WV74 236 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 ZNF669Q96BR6 464 aaPredicted RBP7.49□□□□□ -1.21
UPF3B-203ENST00000478840 CORO1BQ9BR76 489 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 CCDC86Q9H6F5 360 aaKnown RBP7.49□□□□□ -1.21
UPF3B-203ENST00000478840 PCDHA4Q9UN74 947 aa7.49□□□□□ -1.21
UPF3B-203ENST00000478840 ALBP02768 609 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 IFRD2Q12894 506 aaPredicted RBP7.48□□□□□ -1.21
UPF3B-203ENST00000478840 WIPI1Q5MNZ9 446 aaPredicted RBP7.48□□□□□ -1.21
UPF3B-203ENST00000478840 TMEM201Q5SNT2 666 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 LRFN4Q6PJG9 635 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 CYFIP1Q7L576 1253 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 HDXQ7Z353 690 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 SLC7A3Q8WY07 619 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 PLPPR2Q96GM1 343 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 JPH1Q9HDC5 661 aaPredicted RBP7.48□□□□□ -1.21
UPF3B-203ENST00000478840 PRDM6Q9NQX0 595 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 ST7Q9NRC1 585 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 TMEM260Q9NX78 707 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 SLC12A7Q9Y666 1083 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 SYNGAP1Q96PV0 1343 aa7.48□□□□□ -1.21
UPF3B-203ENST00000478840 CCDC85CA6NKD9 419 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 LINC01387J3KSC0 135 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 ZNF862O60290 1169 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 GJB6O95452 261 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 ECEL1O95672 775 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 MAOBP27338 520 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 INPP5AQ14642 412 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 KIF4BQ2VIQ3 1234 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 RNF187Q5TA31 235 aaPredicted RBP7.47□□□□□ -1.21
UPF3B-203ENST00000478840 LARP1BQ659C4 914 aaKnown RBP7.47□□□□□ -1.21
UPF3B-203ENST00000478840 RUFY4Q6ZNE9 571 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 TTC6Q86TZ1 520 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 KLHL23Q8NBE8 558 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 ST13P5Q8NFI4 369 aaPredicted RBP7.47□□□□□ -1.21
UPF3B-203ENST00000478840 IRF7Q92985 503 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 ACSBG1Q96GR2 724 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 GPATCH3Q96I76 525 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 ANTXR1Q9H6X2 564 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 GMIPQ9P107 970 aa7.47□□□□□ -1.21
UPF3B-203ENST00000478840 LILRB5O75023 590 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 CDC45O75419 566 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 CTSBP07858 339 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 SRSF11Q05519 484 aaKnown RBP7.46□□□□□ -1.22
UPF3B-203ENST00000478840 MLECQ14165 292 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 PTPROQ16827 1216 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 CDCP2Q5VXM1 449 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 MAP4K3Q8IVH8 894 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 ZSCAN1Q8NBB4 408 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 APPBP2Q92624 585 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 KANSL2Q9H9L4 492 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 REV1Q9UBZ9 1251 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 PRKAB1Q9Y478 270 aa7.46□□□□□ -1.22
UPF3B-203ENST00000478840 TNFRSF10CO14798 259 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 CDC25BP30305 580 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 CHMP4BP1P59074 171 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 RING1Q06587 406 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 PDE4BQ07343 736 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 SUZ12Q15022 739 aaKnown RBP7.45□□□□□ -1.22
UPF3B-203ENST00000478840 PPP2R5EQ16537 467 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 C2orf27AQ580R0 203 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 ARSHQ5FYA8 562 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 HP1BP3Q5SSJ5 553 aaPredicted RBP7.45□□□□□ -1.22
UPF3B-203ENST00000478840 MSL1Q68DK7 614 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 TXNDC11Q6PKC3 985 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 KIAA0907Q7Z7F0 614 aaPredicted RBP7.45□□□□□ -1.22
UPF3B-203ENST00000478840 HOMER1Q86YM7 354 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 WFDC8Q8IUA0 241 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 FAM178BQ8IXR5 827 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 THAP3Q8WTV1 239 aaPredicted RBP7.45□□□□□ -1.22
UPF3B-203ENST00000478840 KLHDC7BQ96G42 594 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 ZC3H12CQ9C0D7 883 aaKnown RBP7.45□□□□□ -1.22
UPF3B-203ENST00000478840 CNNM2Q9H8M5 875 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 FANCLQ9NW38 375 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 ADAM30Q9UKF2 790 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 PCDHGC5Q9Y5F6 944 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 CORINQ9Y5Q5 1042 aa7.45□□□□□ -1.22
UPF3B-203ENST00000478840 SLC22A31A6NKX4 558 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 UPK3BL1B0FP48 263 aa7.44□□□□□ -1.22
UPF3B-203ENST00000478840 UPK3BL2E5RIL1 263 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms