RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 DGKZQ13574 1117 aa21.96■■□□□ 1.11
UPF3A-203ENST00000474056 SH3BP5LQ7L8J4 393 aa21.96■■□□□ 1.11
UPF3A-203ENST00000474056 OTUD5Q96G74 571 aa21.96■■□□□ 1.11
UPF3A-203ENST00000474056 ABHD8Q96I13 439 aa21.96■■□□□ 1.11
UPF3A-203ENST00000474056 YTHDC1Q96MU7 727 aaKnown RBP21.96■■□□□ 1.11
UPF3A-203ENST00000474056 CFHR5Q9BXR6 569 aa21.96■■□□□ 1.11
UPF3A-203ENST00000474056 DOCK1Q14185 1865 aa21.95■■□□□ 1.1
UPF3A-203ENST00000474056 DDTLA6NHG4 134 aaPredicted RBP21.95■■□□□ 1.1
UPF3A-203ENST00000474056 SPDYE5A6NIY4 337 aa21.95■■□□□ 1.1
UPF3A-203ENST00000474056 KIF1BPQ96EK5 621 aa21.95■■□□□ 1.1
UPF3A-203ENST00000474056 MS4A4AQ96JQ5 239 aa21.95■■□□□ 1.1
UPF3A-203ENST00000474056 PIH1D3Q9NQM4 214 aaKnown RBP21.95■■□□□ 1.1
UPF3A-203ENST00000474056 NDUFB9Q9Y6M9 179 aa21.95■■□□□ 1.1
UPF3A-203ENST00000474056 SIPA1L1O43166 1804 aa21.94■■□□□ 1.1
UPF3A-203ENST00000474056 TESPA1A2RU30 521 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-203ENST00000474056 ALDH1A1P00352 501 aa21.94■■□□□ 1.1
UPF3A-203ENST00000474056 NAA16Q6N069 864 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-203ENST00000474056 ZNF296Q8WUU4 475 aaPredicted RBP21.94■■□□□ 1.1
UPF3A-203ENST00000474056 PTPN18Q99952 460 aa21.94■■□□□ 1.1
UPF3A-203ENST00000474056 ZNF112Q9UJU3 913 aa21.94■■□□□ 1.1
UPF3A-203ENST00000474056 ATAD5Q96QE3 1844 aa21.94■■□□□ 1.1
UPF3A-203ENST00000474056 GPR25O00155 361 aa21.93■■□□□ 1.1
UPF3A-203ENST00000474056 SLURP2P0DP57 97 aa21.93■■□□□ 1.1
UPF3A-203ENST00000474056 ADGRA1Q86SQ6 560 aa21.93■■□□□ 1.1
UPF3A-203ENST00000474056 ERO1BQ86YB8 467 aa21.93■■□□□ 1.1
UPF3A-203ENST00000474056 ZSCAN29Q8IWY8 852 aaPredicted RBP21.93■■□□□ 1.1
UPF3A-203ENST00000474056 PHIPQ8WWQ0 1821 aa21.93■■□□□ 1.1
UPF3A-203ENST00000474056 PTPRFP10586 1907 aa21.92■■□□□ 1.1
UPF3A-203ENST00000474056 GTF2A2P52657 109 aa21.92■■□□□ 1.1
UPF3A-203ENST00000474056 CLASRPQ8N2M8 674 aaKnown RBP21.92■■□□□ 1.1
UPF3A-203ENST00000474056 BRI3BPQ8WY22 251 aa21.92■■□□□ 1.1
UPF3A-203ENST00000474056 AATFQ9NY61 560 aaKnown RBP eCLIP21.92■■□□□ 1.1
UPF3A-203ENST00000474056 MYH1P12882 1939 aa21.92■■□□□ 1.1
UPF3A-203ENST00000474056 CCL15-CCL14A0A0B4J2E2 113 aa21.91■■□□□ 1.1
UPF3A-203ENST00000474056 IRF6O14896 467 aa21.91■■□□□ 1.1
UPF3A-203ENST00000474056 RAB11FIP3O75154 756 aa21.91■■□□□ 1.1
UPF3A-203ENST00000474056 MAP4K4O95819 1239 aaPredicted RBP21.91■■□□□ 1.1
UPF3A-203ENST00000474056 CCL15Q16663 113 aa21.91■■□□□ 1.1
UPF3A-203ENST00000474056 NOM1Q5C9Z4 860 aaKnown RBP21.91■■□□□ 1.1
UPF3A-203ENST00000474056 TEX11Q8IYF3 940 aa21.91■■□□□ 1.1
UPF3A-203ENST00000474056 SH3RF3Q8TEJ3 882 aaPredicted RBP21.91■■□□□ 1.1
UPF3A-203ENST00000474056 BCL11AQ9H165 835 aa21.91■■□□□ 1.1
UPF3A-203ENST00000474056 ANTXR1Q9H6X2 564 aa21.91■■□□□ 1.1
UPF3A-203ENST00000474056 NPM3O75607 178 aaKnown RBP21.9■■□□□ 1.1
UPF3A-203ENST00000474056 PPIL2Q13356 520 aa21.9■■□□□ 1.1
UPF3A-203ENST00000474056 NOL9Q5SY16 702 aaKnown RBP21.9■■□□□ 1.1
UPF3A-203ENST00000474056 OTUD7BQ6GQQ9 843 aa21.9■■□□□ 1.1
UPF3A-203ENST00000474056 NOL10Q9BSC4 688 aaKnown RBP21.9■■□□□ 1.1
UPF3A-203ENST00000474056 MYH7P12883 1935 aa21.9■■□□□ 1.1
UPF3A-203ENST00000474056 COL2A1P02458 1487 aaPredicted RBP21.9■■□□□ 1.1
UPF3A-203ENST00000474056 PHF20L1A8MW92 1017 aa21.89■■□□□ 1.09
UPF3A-203ENST00000474056 IDH1O75874 414 aaKnown RBP21.89■■□□□ 1.09
UPF3A-203ENST00000474056 CRHR2Q13324 411 aa21.89■■□□□ 1.09
UPF3A-203ENST00000474056 CTU1Q7Z7A3 348 aaKnown RBP21.89■■□□□ 1.09
UPF3A-203ENST00000474056 OSBPL5Q9H0X9 879 aaPredicted RBP21.89■■□□□ 1.09
UPF3A-203ENST00000474056 IGSF3O75054 1194 aa21.88■■□□□ 1.09
UPF3A-203ENST00000474056 BAG3O95817 575 aa21.88■■□□□ 1.09
UPF3A-203ENST00000474056 IFIT2P09913 472 aaKnown RBP21.88■■□□□ 1.09
UPF3A-203ENST00000474056 RRP1P56182 461 aaKnown RBP21.88■■□□□ 1.09
UPF3A-203ENST00000474056 MAP3K10Q02779 954 aa21.88■■□□□ 1.09
UPF3A-203ENST00000474056 PPATQ06203 517 aa21.88■■□□□ 1.09
UPF3A-203ENST00000474056 FAM43AQ8N2R8 423 aa21.88■■□□□ 1.09
UPF3A-203ENST00000474056 FKTNO75072 461 aa21.87■■□□□ 1.09
UPF3A-203ENST00000474056 CYP7A1P22680 504 aa21.87■■□□□ 1.09
UPF3A-203ENST00000474056 PPP4CP60510 307 aa21.87■■□□□ 1.09
UPF3A-203ENST00000474056 FAM196BA6NMK8 535 aa21.86■■□□□ 1.09
UPF3A-203ENST00000474056 PLCG2P16885 1265 aa21.86■■□□□ 1.09
UPF3A-203ENST00000474056 DYNLL1P63167 89 aaKnown RBP21.86■■□□□ 1.09
UPF3A-203ENST00000474056 SNAPC2Q13487 334 aa21.86■■□□□ 1.09
UPF3A-203ENST00000474056 MAGEB6Q8N7X4 407 aa21.86■■□□□ 1.09
UPF3A-203ENST00000474056 TGFBRAP1Q8WUH2 860 aa21.86■■□□□ 1.09
UPF3A-203ENST00000474056 CETPP11597 493 aa21.85■■□□□ 1.09
UPF3A-203ENST00000474056 TAF1CQ15572 869 aaPredicted RBP21.85■■□□□ 1.09
UPF3A-203ENST00000474056 MAPKAPK5Q8IW41 473 aa21.85■■□□□ 1.09
UPF3A-203ENST00000474056 SCYL3Q8IZE3 742 aa21.85■■□□□ 1.09
UPF3A-203ENST00000474056 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.85■■□□□ 1.09
UPF3A-203ENST00000474056 KCNH4Q9UQ05 1017 aa21.85■■□□□ 1.09
UPF3A-203ENST00000474056 FLT1P17948 1338 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 NAV1Q8NEY1 1877 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 CCDC85CA6NKD9 419 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 BTBD19C9JJ37 291 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 SMARCA5O60264 1052 aaPredicted RBP21.84■■□□□ 1.09
UPF3A-203ENST00000474056 TBC1D12O60347 775 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 MAP3K12Q12852 859 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 MIGA1Q8NAN2 632 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 DNAJC2Q99543 621 aaKnown RBP21.84■■□□□ 1.09
UPF3A-203ENST00000474056 LRRCC1Q9C099 1032 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.84■■□□□ 1.091e-6■■■□□ 14.9
UPF3A-203ENST00000474056 ZSWIM8A7E2V4 1837 aa21.84■■□□□ 1.09
UPF3A-203ENST00000474056 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.83■■□□□ 1.09
UPF3A-203ENST00000474056 CTNND1O60716 968 aaKnown RBP21.82■■□□□ 1.08
UPF3A-203ENST00000474056 PTPRAP18433 802 aa21.82■■□□□ 1.08
UPF3A-203ENST00000474056 TTF1Q15361 905 aaPredicted RBP21.82■■□□□ 1.08
UPF3A-203ENST00000474056 EDC3Q96F86 508 aaKnown RBP21.82■■□□□ 1.08
UPF3A-203ENST00000474056 ZFYVE28Q9HCC9 887 aa21.82■■□□□ 1.08
UPF3A-203ENST00000474056 PICK1Q9NRD5 415 aa21.82■■□□□ 1.08
UPF3A-203ENST00000474056 DDX60LQ5H9U9 1706 aaKnown RBP21.82■■□□□ 1.08
UPF3A-203ENST00000474056 GOLIM4O00461 696 aa21.81■■□□□ 1.08
UPF3A-203ENST00000474056 BOLA2Q9H3K6 86 aa21.81■■□□□ 1.08
UPF3A-203ENST00000474056 MOGSQ13724 837 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms