RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 RHBDL3P58872 404 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 TCP10Q12799 353 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 ADGRA1Q86SQ6 560 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.4■□□□□ 0.54
LIMS1-212ENST00000474038 FAM151AQ8WW52 585 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 CNKSR2Q8WXI2 1034 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 R3HDMLQ9H3Y0 253 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 RWDD1Q9H446 243 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-212ENST00000474038 ECHDC1Q9NTX5 307 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 RPAP1Q9BWH6 1393 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-212ENST00000474038 LAMB1P07942 1786 aa18.4■□□□□ 0.54
LIMS1-212ENST00000474038 CCDC85CA6NKD9 419 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 GOLIM4O00461 696 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 WDHD1O75717 1129 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-212ENST00000474038 IGHDP01880 384 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 RGS3P49796 1198 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 MAP3K9P80192 1104 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 MAP3K12Q12852 859 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 VGLL4Q14135 290 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 TTF1Q15361 905 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-212ENST00000474038 ANKRD45Q5TZF3 282 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 IFNL1Q8IU54 200 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 ZNF296Q8WUU4 475 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-212ENST00000474038 OPTNQ96CV9 577 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 EDC3Q96F86 508 aaKnown RBP18.39■□□□□ 0.53
LIMS1-212ENST00000474038 HAUS7Q99871 368 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 IDI2Q9BXS1 227 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 MYH1P12882 1939 aa18.39■□□□□ 0.53
LIMS1-212ENST00000474038 IGF2BP3O00425 579 aaKnown RBP eCLIP18.38■□□□□ 0.53
LIMS1-212ENST00000474038 CYP7A1P22680 504 aa18.38■□□□□ 0.53
LIMS1-212ENST00000474038 ZFPM1Q8IX07 1006 aa18.38■□□□□ 0.53
LIMS1-212ENST00000474038 SMC5Q8IY18 1101 aa18.38■□□□□ 0.53
LIMS1-212ENST00000474038 MAGEB6Q8N7X4 407 aa18.38■□□□□ 0.53
LIMS1-212ENST00000474038 OTUD7AQ8TE49 926 aaPredicted RBP18.38■□□□□ 0.53
LIMS1-212ENST00000474038 PAG1Q9NWQ8 432 aa18.38■□□□□ 0.53
LIMS1-212ENST00000474038 GPR25O00155 361 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 ENTPD3O75355 529 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 MAP4K4O95819 1239 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-212ENST00000474038 INHBEP58166 350 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 PPP4CP60510 307 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 TSHZ3Q63HK5 1081 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 MIGA2Q7L4E1 593 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 GPATCH3Q96I76 525 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 WRNIP1Q96S55 665 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 NOL10Q9BSC4 688 aaKnown RBP18.37■□□□□ 0.53
LIMS1-212ENST00000474038 DDX4Q9NQI0 724 aaKnown RBP18.37■□□□□ 0.53
LIMS1-212ENST00000474038 AATFQ9NY61 560 aaKnown RBP eCLIP18.37■□□□□ 0.53
LIMS1-212ENST00000474038 CSADQ9Y600 493 aa18.37■□□□□ 0.53
LIMS1-212ENST00000474038 BAG3O95817 575 aa18.36■□□□□ 0.53
LIMS1-212ENST00000474038 TMED8Q6PL24 325 aaPredicted RBP18.36■□□□□ 0.53
LIMS1-212ENST00000474038 CTU1Q7Z7A3 348 aaKnown RBP18.36■□□□□ 0.53
LIMS1-212ENST00000474038 SH3RF3Q8TEJ3 882 aaPredicted RBP18.36■□□□□ 0.53
LIMS1-212ENST00000474038 CFHR5Q9BXR6 569 aa18.36■□□□□ 0.53
LIMS1-212ENST00000474038 ZBTB47Q9UFB7 747 aaPredicted RBP18.36■□□□□ 0.53
LIMS1-212ENST00000474038 TTC41PQ6P2S7 1318 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 SALL3Q9BXA9 1300 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 NPM3O75607 178 aaKnown RBP18.35■□□□□ 0.53
LIMS1-212ENST00000474038 ALDH1A1P00352 501 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 PDE6AP16499 860 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 PICALMQ13492 652 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 SLC9C2Q5TAH2 1124 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 TEX11Q8IYF3 940 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 ZKSCAN4Q969J2 545 aaPredicted RBP18.35■□□□□ 0.53
LIMS1-212ENST00000474038 HOOK2Q96ED9 719 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 OTUD5Q96G74 571 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 PTPN18Q99952 460 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 SNCAIPQ9Y6H5 919 aa18.35■□□□□ 0.53
LIMS1-212ENST00000474038 TESPA1A2RU30 521 aaPredicted RBP18.34■□□□□ 0.53
LIMS1-212ENST00000474038 PLCG2P16885 1265 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 DYNLL1P63167 89 aaKnown RBP18.34■□□□□ 0.53
LIMS1-212ENST00000474038 NOM1Q5C9Z4 860 aaKnown RBP18.34■□□□□ 0.53
LIMS1-212ENST00000474038 DCAF15Q66K64 600 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 B4GALNT3Q6L9W6 998 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 SH3BP5LQ7L8J4 393 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 MIGA1Q8NAN2 632 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 MS4A4AQ96JQ5 239 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 ZNF341Q9BYN7 854 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 SIPA1L1O43166 1804 aa18.34■□□□□ 0.53
LIMS1-212ENST00000474038 SPDYE5A6NIY4 337 aa18.33■□□□□ 0.52
LIMS1-212ENST00000474038 MX1P20591 662 aa18.33■□□□□ 0.52
LIMS1-212ENST00000474038 INPP5BP32019 993 aa18.33■□□□□ 0.52
LIMS1-212ENST00000474038 PI4K2BQ8TCG2 481 aa18.33■□□□□ 0.52
LIMS1-212ENST00000474038 BRI3BPQ8WY22 251 aa18.33■□□□□ 0.52
LIMS1-212ENST00000474038 ZNF532Q9HCE3 1301 aa18.32■□□□□ 0.52
LIMS1-212ENST00000474038 TCRBV5S4A2TA0A5A2 114 aa18.32■□□□□ 0.52
LIMS1-212ENST00000474038 DDTLA6NHG4 134 aaPredicted RBP18.32■□□□□ 0.52
LIMS1-212ENST00000474038 FKTNO75072 461 aa18.32■□□□□ 0.52
LIMS1-212ENST00000474038 LNPKQ9C0E8 428 aa18.32■□□□□ 0.52
LIMS1-212ENST00000474038 NAV1Q8NEY1 1877 aa18.32■□□□□ 0.52
LIMS1-212ENST00000474038 COL2A1P02458 1487 aaPredicted RBP18.32■□□□□ 0.52
LIMS1-212ENST00000474038 ATRNL1Q5VV63 1379 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 BAZ2AQ9UIF9 1905 aaKnown RBP18.31■□□□□ 0.52
LIMS1-212ENST00000474038 CCL15-CCL14A0A0B4J2E2 113 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 ERC2O15083 957 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 ADD2P35612 726 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 GTF2A2P52657 109 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 CRHR2Q13324 411 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 CCL15Q16663 113 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 OTUD7BQ6GQQ9 843 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 ERO1BQ86YB8 467 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms