RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 TMOD2Q9NZR1 351 aa11.75□□□□□ -0.53
VCL-204ENST00000472585 UNC80Q8N2C7 3258 aa11.75□□□□□ -0.53
VCL-204ENST00000472585 PRKCZQ05513 592 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 PPATQ06203 517 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 TCP10Q12799 353 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 DIXDC1Q155Q3 683 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 DCAF15Q66K64 600 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 CDC42EP5Q6NZY7 148 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 VPS37DQ86XT2 251 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 MRPL50Q8N5N7 158 aaKnown RBP11.74□□□□□ -0.53
VCL-204ENST00000472585 TBC1D22AQ8WUA7 517 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 COL25A1Q9BXS0 654 aaPredicted RBP11.74□□□□□ -0.53
VCL-204ENST00000472585 MRS2Q9HD23 443 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 FAM198AQ9UFP1 575 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 KCNH4Q9UQ05 1017 aa11.74□□□□□ -0.53
VCL-204ENST00000472585 ADCY3O60266 1144 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 CYP2C8P10632 490 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 BMP8BP34820 402 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 CAVIN4Q5BKX8 364 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 Q7L0L9 218 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 ATG9AQ7Z3C6 839 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 FAM151AQ8WW52 585 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 ALPK3Q96L96 1907 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 ZNF341Q9BYN7 854 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 DAGLAQ9Y4D2 1042 aa11.73□□□□□ -0.53
VCL-204ENST00000472585 PHF20L1A8MW92 1017 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 FRAT2O75474 233 aaPredicted RBP11.72□□□□□ -0.53
VCL-204ENST00000472585 BCRP11274 1271 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 PRDX5P30044 214 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 NECAB2Q7Z6G3 386 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 C7orf61Q8IZ16 206 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 PAWRQ96IZ0 340 aaKnown RBP11.72□□□□□ -0.53
VCL-204ENST00000472585 DEFB118Q96PH6 123 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 PARK7Q99497 189 aaKnown RBP11.72□□□□□ -0.53
VCL-204ENST00000472585 GDF15Q99988 308 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 GABRQQ9UN88 632 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 SUGT1Q9Y2Z0 365 aa11.72□□□□□ -0.53
VCL-204ENST00000472585 ATRNL1Q5VV63 1379 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 ZNF521Q96K83 1311 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 CACNA1FO60840 1977 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 INHAP05111 366 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 EVX2Q03828 476 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 SH3BP5LQ7L8J4 393 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.71□□□□□ -0.53
VCL-204ENST00000472585 MTMR10Q9NXD2 777 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 TAOK2Q9UL54 1235 aa11.71□□□□□ -0.53
VCL-204ENST00000472585 RPAP1Q9BWH6 1393 aaPredicted RBP11.7□□□□□ -0.54
VCL-204ENST00000472585 EYA2O00167 538 aa11.7□□□□□ -0.54
VCL-204ENST00000472585 ELNP15502 786 aa11.7□□□□□ -0.54
VCL-204ENST00000472585 FLT3LGP49771 235 aa11.7□□□□□ -0.54
VCL-204ENST00000472585 PUM3Q15397 648 aaKnown RBP11.7□□□□□ -0.54
VCL-204ENST00000472585 LRIT3Q3SXY7 679 aa11.7□□□□□ -0.54
VCL-204ENST00000472585 NOL9Q5SY16 702 aaKnown RBP11.7□□□□□ -0.54
VCL-204ENST00000472585 TDHQ8IZJ6 230 aa11.7□□□□□ -0.54
VCL-204ENST00000472585 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.7□□□□□ -0.54
VCL-204ENST00000472585 ZMYND8Q9ULU4 1186 aaPredicted RBP11.7□□□□□ -0.54
VCL-204ENST00000472585 KIF16BQ96L93 1317 aa11.69□□□□□ -0.54
VCL-204ENST00000472585 TNPO2O14787 897 aaKnown RBP11.69□□□□□ -0.54
VCL-204ENST00000472585 IFIT1P09914 478 aaKnown RBP11.69□□□□□ -0.54
VCL-204ENST00000472585 MAP3K10Q02779 954 aa11.69□□□□□ -0.54
VCL-204ENST00000472585 PXYLP1Q8TE99 480 aa11.69□□□□□ -0.54
VCL-204ENST00000472585 SSH1Q8WYL5 1049 aa11.69□□□□□ -0.54
VCL-204ENST00000472585 LPIN2Q92539 896 aa11.69□□□□□ -0.54
VCL-204ENST00000472585 USP40Q9NVE5 1235 aa11.69□□□□□ -0.54
VCL-204ENST00000472585 DOCK3Q8IZD9 2030 aa11.69□□□□□ -0.54
VCL-204ENST00000472585 SYN1P17600 705 aa11.68□□□□□ -0.54
VCL-204ENST00000472585 CCDC84Q86UT8 332 aaPredicted RBP11.68□□□□□ -0.54
VCL-204ENST00000472585 WDR66Q8TBY9 1149 aa11.68□□□□□ -0.54
VCL-204ENST00000472585 UBE2OQ9C0C9 1292 aaKnown RBP11.68□□□□□ -0.54
VCL-204ENST00000472585 PAK6Q9NQU5 681 aaPredicted RBP11.68□□□□□ -0.54
VCL-204ENST00000472585 AFG3L2Q9Y4W6 797 aa11.68□□□□□ -0.54
VCL-204ENST00000472585 ZHX2Q9Y6X8 837 aa11.68□□□□□ -0.54
VCL-204ENST00000472585 MAST3O60307 1309 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 A0A0G2JLL6 359 aaPredicted RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 DDTLA6NHG4 134 aaPredicted RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 CXCL11O14625 94 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 PTPRAP18433 802 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 ADORA1P30542 326 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 MAGEA10P43363 369 aaPredicted RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 PHKA1P46020 1223 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 IRF5Q13568 498 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 FASTKD5Q7L8L6 764 aaKnown RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 PRRT2Q7Z6L0 340 aaPredicted RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 FAM9BQ8IZU0 186 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 ANKLE1Q8NAG6 615 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 SP7Q8TDD2 431 aaPredicted RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 DIS3LQ8TF46 1054 aaKnown RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 COA7Q96BR5 231 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 CRISPLD2Q9H0B8 497 aa11.67□□□□□ -0.54
VCL-204ENST00000472585 DDX4Q9NQI0 724 aaKnown RBP11.67□□□□□ -0.54
VCL-204ENST00000472585 SLC5A1P13866 664 aa11.66□□□□□ -0.54
VCL-204ENST00000472585 RGS3P49796 1198 aa11.66□□□□□ -0.54
VCL-204ENST00000472585 SMCR8Q8TEV9 937 aaPredicted RBP11.66□□□□□ -0.54
VCL-204ENST00000472585 ZNF384Q8TF68 577 aa11.66□□□□□ -0.54
VCL-204ENST00000472585 IDI2Q9BXS1 227 aa11.66□□□□□ -0.54
VCL-204ENST00000472585 NBPF3Q9H094 633 aa11.66□□□□□ -0.54
VCL-204ENST00000472585 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.66□□□□□ -0.54
VCL-204ENST00000472585 SIL1Q9H173 461 aa11.66□□□□□ -0.54
VCL-204ENST00000472585 TSPYL2Q9H2G4 693 aaPredicted RBP11.66□□□□□ -0.54
VCL-204ENST00000472585 PA2G4Q9UQ80 394 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms