RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	BPNT1	O95861	308 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	NRG1	Q02297	640 aa	Predicted RBP	6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	GRIK4	Q16099	956 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	CWF19L2	Q2TBE0	894 aa	Known RBP	6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	ACAD11	Q709F0	780 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	REXO1	Q8N1G1	1221 aa	Known RBP	6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	FBXO27	Q8NI29	283 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	DRC1	Q96MC2	740 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	CYP4F12	Q9HCS2	524 aa		6.09	□□□□□ -1.43
PTCD3-209	ENST00000472044	FGR	P09769	529 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	ERVK-24	P63145	666 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	INPP5A	Q14642	412 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	NUTM2G	Q5VZR2	741 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	SHISA2	Q6UWI4	295 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044		Q6ZS46	218 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	CYFIP1	Q7L576	1253 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	HDX	Q7Z353	690 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	ARMC5	Q96C12	935 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	PLPPR2	Q96GM1	343 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	GSX1	Q9H4S2	264 aa	Predicted RBP	6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	RAD18	Q9NS91	495 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	GINM1	Q9NU53	330 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	PRKAG2	Q9UGJ0	569 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	STRIP2	Q9ULQ0	834 aa		6.08	□□□□□ -1.44
PTCD3-209	ENST00000472044	TMPRSS2	O15393	492 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	TLR3	O15455	904 aa	Known RBP	6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	ATE1	O95260	518 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	TIAF1	O95411	115 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	DNAJA1	P31689	397 aa	Known RBP	6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	ZNF165	P49910	485 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	ID3	Q02535	119 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	SOX4	Q06945	474 aa	Predicted RBP	6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	SEZ6	Q53EL9	994 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	WIPI1	Q5MNZ9	446 aa	Predicted RBP	6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	ANKRD34A	Q69YU3	496 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	LRFN4	Q6PJG9	635 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	TANGO6	Q9C0B7	1094 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	EHMT1	Q9H9B1	1298 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	CRIM1	Q9NZV1	1036 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	STK17A	Q9UEE5	414 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	EFR3B	Q9Y2G0	817 aa		6.07	□□□□□ -1.44
PTCD3-209	ENST00000472044	APBA3	O96018	575 aa		6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	CDK8	P49336	464 aa		6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	ADGRE1	Q14246	886 aa		6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	MCF2L2	Q86YR7	1114 aa		6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	AKTIP	Q9H8T0	292 aa		6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	BRMS1	Q9HCU9	246 aa		6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	PPP1R9A	Q9ULJ8	1098 aa		6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	6.06	□□□□□ -1.44
PTCD3-209	ENST00000472044	RNF225	M0QZC1	329 aa	Predicted RBP	6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	FANCG	O15287	622 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	ADH5	P11766	374 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	ATP2B1	P20020	1258 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	NASP	P49321	788 aa	Predicted RBP	6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	ELMO3	Q96BJ8	720 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	FANCD2OS	Q96PS1	177 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	6.05	□□□□□ -1.44	1e-13	■■■□□ 17.4
PTCD3-209	ENST00000472044	ATXN3L	Q9H3M9	355 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	DISC1	Q9NRI5	854 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	USP21	Q9UK80	565 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	HIF3A	Q9Y2N7	669 aa		6.05	□□□□□ -1.44
PTCD3-209	ENST00000472044	DCDC2C	A8MYV0	355 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	IMPDH2	P12268	514 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	CLC	Q05315	142 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	PDE4B	Q07343	736 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	AKAP4	Q5JQC9	854 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	FDX2	Q6P4F2	183 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	C12orf40	Q86WS4	652 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	AGGF1	Q8N302	714 aa	eCLIP	6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	C12orf50	Q8NA57	414 aa	Predicted RBP	6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	RBBP8NL	Q8NC74	664 aa	Predicted RBP	6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	RNF214	Q8ND24	703 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	WFDC12	Q8WWY7	111 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	UBXN4	Q92575	508 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	CEP41	Q9BYV8	373 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	WNT10A	Q9GZT5	417 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	ADAM30	Q9UKF2	790 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	ZNRF3	Q9ULT6	936 aa		6.04	□□□□□ -1.44
PTCD3-209	ENST00000472044	IGSF3	O75054	1194 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	ALX3	O95076	343 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	DRD2	P14416	443 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	NOS3	P29474	1203 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	MCM4	P33991	863 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	NTF4	P34130	210 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	RBL2	Q08999	1139 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	MBTPS1	Q14703	1052 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	TMEM201	Q5SNT2	666 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	DZIP1L	Q8IYY4	767 aa	Known RBP	6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	C2CD4A	Q8NCU7	369 aa	Predicted RBP	6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	FAM46A	Q96IP4	442 aa	Known RBP	6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	SRRT	Q9BXP5	876 aa	Known RBP	6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	PCDHB14	Q9Y5E9	798 aa		6.03	□□□□□ -1.44
PTCD3-209	ENST00000472044	GRIN3B	O60391	1043 aa		6.02	□□□□□ -1.45
PTCD3-209	ENST00000472044	HTR3B	O95264	441 aa		6.02	□□□□□ -1.45
PTCD3-209	ENST00000472044	IREB2	P48200	963 aa	Known RBP	6.02	□□□□□ -1.45
PTCD3-209	ENST00000472044	GIPR	P48546	466 aa		6.02	□□□□□ -1.45
PTCD3-209	ENST00000472044	UVSSA	Q2YD98	709 aa		6.02	□□□□□ -1.45
PTCD3-209	ENST00000472044	LRRFIP1	Q32MZ4	808 aa	Known RBP	6.02	□□□□□ -1.45
PTCD3-209	ENST00000472044	PPM1J	Q5JR12	505 aa		6.02	□□□□□ -1.45

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